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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
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qiime_test_data/core_diversity_analyses/core_output/index.html
 
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<html>
 
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<head><title>QIIME results</title></head>
 
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<body>
 
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<a href="http://www.qiime.org" target="_blank"><img src="http://qiime.org/_static/wordpressheader.png" alt="www.qiime.org""/></a><p>
 
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<table border=1>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Run summary data</td></tr>
 
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<tr><td>Master run log</td><td> <a href="./log_20130513121941.txt" target="_blank">log_20130513121941.txt</a></td></tr>
 
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<tr><td>BIOM table statistics</td><td> <a href="./biom_table_summary.txt" target="_blank">biom_table_summary.txt</a></td></tr>
 
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<tr><td>Filtered BIOM table (minimum sequence count: 20)</td><td> <a href="./table_mc20.biom.gz" target="_blank">table_mc20.biom.gz</a></td></tr>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Taxonomic summary results (by day)</td></tr>
 
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<tr><td>Taxa summary bar plots</td><td> <a href="./taxa_plots_day/taxa_summary_plots/bar_charts.html" target="_blank">bar_charts.html</a></td></tr>
 
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<tr><td>Taxa summary area plots</td><td> <a href="./taxa_plots_day/taxa_summary_plots/area_charts.html" target="_blank">area_charts.html</a></td></tr>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Taxonomic summary results</td></tr>
 
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<tr><td>Taxa summary bar plots</td><td> <a href="./taxa_plots/taxa_summary_plots/bar_charts.html" target="_blank">bar_charts.html</a></td></tr>
 
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<tr><td>Taxa summary area plots</td><td> <a href="./taxa_plots/taxa_summary_plots/area_charts.html" target="_blank">area_charts.html</a></td></tr>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Taxonomic summary results (by SampleType)</td></tr>
 
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<tr><td>Taxa summary bar plots</td><td> <a href="./taxa_plots_SampleType/taxa_summary_plots/bar_charts.html" target="_blank">bar_charts.html</a></td></tr>
 
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<tr><td>Taxa summary area plots</td><td> <a href="./taxa_plots_SampleType/taxa_summary_plots/area_charts.html" target="_blank">area_charts.html</a></td></tr>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Category results</td></tr>
 
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<tr><td>Category significance (SampleType)</td><td> <a href="./category_significance_SampleType.txt" target="_blank">category_significance_SampleType.txt</a></td></tr>
 
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<tr><td>Category significance (day)</td><td> <a href="./category_significance_day.txt" target="_blank">category_significance_day.txt</a></td></tr>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Alpha diversity results</td></tr>
 
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<tr><td>Alpha rarefaction plots</td><td> <a href="./arare_max20/alpha_rarefaction_plots/rarefaction_plots.html" target="_blank">rarefaction_plots.html</a></td></tr>
 
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<tr><td>Alpha diversity statistics (SampleType, chao1)</td><td> <a href="./arare_max20/SampleType_chao1.txt" target="_blank">SampleType_chao1.txt</a></td></tr>
 
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<tr><td>Alpha diversity statistics (SampleType, observed_species)</td><td> <a href="./arare_max20/SampleType_observed_species.txt" target="_blank">SampleType_observed_species.txt</a></td></tr>
 
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<tr><td>Alpha diversity statistics (SampleType, PD_whole_tree)</td><td> <a href="./arare_max20/SampleType_PD_whole_tree.txt" target="_blank">SampleType_PD_whole_tree.txt</a></td></tr>
 
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<tr><td>Alpha diversity statistics (day, chao1)</td><td> <a href="./arare_max20/day_chao1.txt" target="_blank">day_chao1.txt</a></td></tr>
 
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<tr><td>Alpha diversity statistics (day, observed_species)</td><td> <a href="./arare_max20/day_observed_species.txt" target="_blank">day_observed_species.txt</a></td></tr>
 
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<tr><td>Alpha diversity statistics (day, PD_whole_tree)</td><td> <a href="./arare_max20/day_PD_whole_tree.txt" target="_blank">day_PD_whole_tree.txt</a></td></tr>
 
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<tr colspan=2 align=center bgcolor=#e8e8e8><td colspan=2 align=center>Beta diversity results (even sampling: 20)</td></tr>
 
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<tr><td>Distance boxplots (weighted_unifrac)</td><td> <a href="./bdiv_even20/weighted_unifrac_boxplots/SampleType_Distances.pdf" target="_blank">SampleType_Distances.pdf</a></td></tr>
 
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<tr><td>Distance boxplots statistics (weighted_unifrac)</td><td> <a href="./bdiv_even20/weighted_unifrac_boxplots/SampleType_Stats.txt" target="_blank">SampleType_Stats.txt</a></td></tr>
 
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<tr><td>Distance boxplots (weighted_unifrac)</td><td> <a href="./bdiv_even20/weighted_unifrac_boxplots/day_Distances.pdf" target="_blank">day_Distances.pdf</a></td></tr>
 
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<tr><td>Distance boxplots statistics (weighted_unifrac)</td><td> <a href="./bdiv_even20/weighted_unifrac_boxplots/day_Stats.txt" target="_blank">day_Stats.txt</a></td></tr>
 
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<tr><td>3D plot (weighted_unifrac, continuous coloring)</td><td> <a href="./bdiv_even20/weighted_unifrac_3d_continuous/weighted_unifrac_pc_3D_PCoA_plots.html" target="_blank">weighted_unifrac_pc_3D_PCoA_plots.html</a></td></tr>
 
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<tr><td>3D plot (weighted_unifrac, discrete coloring)</td><td> <a href="./bdiv_even20/weighted_unifrac_3d_discrete/weighted_unifrac_pc_3D_PCoA_plots.html" target="_blank">weighted_unifrac_pc_3D_PCoA_plots.html</a></td></tr>
 
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<tr><td>2D plot (weighted_unifrac, continuous coloring)</td><td> <a href="./bdiv_even20/weighted_unifrac_2d_continuous/weighted_unifrac_pc_2D_PCoA_plots.html" target="_blank">weighted_unifrac_pc_2D_PCoA_plots.html</a></td></tr>
 
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<tr><td>2D plot (weighted_unifrac, discrete coloring)</td><td> <a href="./bdiv_even20/weighted_unifrac_2d_discrete/weighted_unifrac_pc_2D_PCoA_plots.html" target="_blank">weighted_unifrac_pc_2D_PCoA_plots.html</a></td></tr>
 
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<tr><td>Distance matrix (weighted_unifrac)</td><td> <a href="./bdiv_even20/weighted_unifrac_dm.txt" target="_blank">weighted_unifrac_dm.txt</a></td></tr>
 
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<tr><td>Principal coordinate matrix (weighted_unifrac)</td><td> <a href="./bdiv_even20/weighted_unifrac_pc.txt" target="_blank">weighted_unifrac_pc.txt</a></td></tr>
 
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<tr><td>Distance boxplots (unweighted_unifrac)</td><td> <a href="./bdiv_even20/unweighted_unifrac_boxplots/SampleType_Distances.pdf" target="_blank">SampleType_Distances.pdf</a></td></tr>
 
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<tr><td>Distance boxplots statistics (unweighted_unifrac)</td><td> <a href="./bdiv_even20/unweighted_unifrac_boxplots/SampleType_Stats.txt" target="_blank">SampleType_Stats.txt</a></td></tr>
 
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<tr><td>Distance boxplots (unweighted_unifrac)</td><td> <a href="./bdiv_even20/unweighted_unifrac_boxplots/day_Distances.pdf" target="_blank">day_Distances.pdf</a></td></tr>
 
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<tr><td>Distance boxplots statistics (unweighted_unifrac)</td><td> <a href="./bdiv_even20/unweighted_unifrac_boxplots/day_Stats.txt" target="_blank">day_Stats.txt</a></td></tr>
 
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<tr><td>3D plot (unweighted_unifrac, continuous coloring)</td><td> <a href="./bdiv_even20/unweighted_unifrac_3d_continuous/unweighted_unifrac_pc_3D_PCoA_plots.html" target="_blank">unweighted_unifrac_pc_3D_PCoA_plots.html</a></td></tr>
 
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<tr><td>3D plot (unweighted_unifrac, discrete coloring)</td><td> <a href="./bdiv_even20/unweighted_unifrac_3d_discrete/unweighted_unifrac_pc_3D_PCoA_plots.html" target="_blank">unweighted_unifrac_pc_3D_PCoA_plots.html</a></td></tr>
 
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<tr><td>2D plot (unweighted_unifrac, continuous coloring)</td><td> <a href="./bdiv_even20/unweighted_unifrac_2d_continuous/unweighted_unifrac_pc_2D_PCoA_plots.html" target="_blank">unweighted_unifrac_pc_2D_PCoA_plots.html</a></td></tr>
 
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<tr><td>2D plot (unweighted_unifrac, discrete coloring)</td><td> <a href="./bdiv_even20/unweighted_unifrac_2d_discrete/unweighted_unifrac_pc_2D_PCoA_plots.html" target="_blank">unweighted_unifrac_pc_2D_PCoA_plots.html</a></td></tr>
 
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<tr><td>Distance matrix (unweighted_unifrac)</td><td> <a href="./bdiv_even20/unweighted_unifrac_dm.txt" target="_blank">unweighted_unifrac_dm.txt</a></td></tr>
 
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<tr><td>Principal coordinate matrix (unweighted_unifrac)</td><td> <a href="./bdiv_even20/unweighted_unifrac_pc.txt" target="_blank">unweighted_unifrac_pc.txt</a></td></tr>
 
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</table>
 
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<p><b>Need help?</b><br>You can get answers to your questions on the <a href="http://forum.qiime.org" target="_blank">QIIME Forum</a>.<br>See the <a href="http://qiime.org/tutorials/index.html" target="_blank">QIIME tutorials</a> for examples of additional analyses that can be run.<br>You can find documentation of the QIIME scripts in the <a href="http://qiime.org/scripts/index.html" target="_blank">QIIME script index</a>.
 
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</body></html>
 
 
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