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- Committer: Package Import Robot
- Date: 2013-06-17 18:28:26 UTC
- mfrom: (9.1.2 sid)
- Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Upload preparations done for BioLinux to Debian
- files added:
- .pc/fix_path_for_support_files/qiime
- .pc/fix_typo_in_error_message
- .pc/fix_typo_in_error_message/scripts
- .pc/remove_matplotlib_warning
- .pc/remove_matplotlib_warning/scripts
- examples
- examples/ipynb
- examples/qiime_tutorial
- examples/qiime_tutorial/18S_tutorial_files
- qiime/workflow
- qiime_test_data
- qiime_test_data/add_alpha_to_mapping_file
- qiime_test_data/add_qiime_labels
- qiime_test_data/add_qiime_labels/combined_fasta
- qiime_test_data/add_qiime_labels/fasta_dir
- qiime_test_data/adjust_seq_orientation
- qiime_test_data/align_seqs
- qiime_test_data/align_seqs/infernal_aligned
- qiime_test_data/align_seqs/muscle_alignment
- qiime_test_data/align_seqs/pynast_aligned
- qiime_test_data/align_seqs/pynast_aligned_defaults
- qiime_test_data/alpha_diversity
- qiime_test_data/alpha_diversity/adiv_chao1_pd
- qiime_test_data/alpha_diversity/otu_tables
- qiime_test_data/alpha_rarefaction
- qiime_test_data/alpha_rarefaction/arare_max100
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_div
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_div_collated
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots/average_plots
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots/average_tables
- qiime_test_data/alpha_rarefaction/arare_max100/alpha_rarefaction_plots/html_plots
- qiime_test_data/alpha_rarefaction/arare_max100/rarefaction
- qiime_test_data/alpha_rarefaction/jobs
- qiime_test_data/ampliconnoise
- qiime_test_data/assign_taxonomy
- qiime_test_data/beta_diversity
- qiime_test_data/beta_diversity/beta_div
- qiime_test_data/beta_diversity/otu_tables
- qiime_test_data/beta_diversity_through_plots
- qiime_test_data/beta_diversity_through_plots/bdiv_even100
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous
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- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_continuous/js
- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_2d_discrete
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- qiime_test_data/beta_diversity_through_plots/bdiv_even100/unweighted_unifrac_3d_continuous
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- qiime_test_data/cluster_quality
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- qiime_test_data/compute_core_microbiome
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- qiime_test_data/core_diversity_analyses
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- qiime_test_data/core_diversity_analyses/core_output/arare_max20/alpha_div_collated/PD_whole_tree.txt
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- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/js
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots/taxa_summary_plots/raw_data
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots
- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_SampleType/taxa_summary_plots/charts
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- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day
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- qiime_test_data/core_diversity_analyses/core_output/taxa_plots_day/taxa_summary_plots/raw_data
- qiime_test_data/count_seqs
- qiime_test_data/demultiplex_fasta
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- qiime_test_data/dissimilarity_mtx_stats
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- qiime_test_data/dissimilarity_mtx_stats/dists
- qiime_test_data/distance_matrix_from_mapping
- qiime_test_data/exclude_seqs_by_blast
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- qiime_test_data/extract_seqs_by_sample_id
- qiime_test_data/filter_alignment
- qiime_test_data/filter_alignment/filtered_alignment
- qiime_test_data/filter_alignment/filtered_alignment_gap_95
- qiime_test_data/filter_distance_matrix
- qiime_test_data/filter_fasta
- qiime_test_data/filter_otus_by_sample
- qiime_test_data/filter_otus_by_sample/filtered_otus
- qiime_test_data/filter_otus_from_otu_table
- qiime_test_data/filter_samples_from_otu_table
- qiime_test_data/filter_taxa_from_otu_table
- qiime_test_data/filter_tree
- qiime_test_data/fix_arb_fasta
- qiime_test_data/identify_chimeric_seqs
- qiime_test_data/identify_chimeric_seqs/usearch61_chimera_checking
- qiime_test_data/identify_missing_files
- qiime_test_data/identify_missing_files/ALIGN_BQ7_
- qiime_test_data/inflate_denoiser_output
- qiime_test_data/inflate_denoiser_output/combined
- qiime_test_data/inflate_denoiser_output/combined/denoised_1st_half
- qiime_test_data/inflate_denoiser_output/combined/denoised_2nd_half
- qiime_test_data/inflate_denoiser_output/combined/split_libraries_output_1st_half
- qiime_test_data/inflate_denoiser_output/combined/split_libraries_output_2nd_half
- qiime_test_data/jackknifed_beta_diversity
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- qiime_test_data/pick_open_reference_otus
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- qiime_test_data/pick_otus
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- qiime_test_data/pick_otus/picked_otus_90_percent_rev
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- qiime_test_data/poller
- qiime_test_data/principal_coordinates
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- qiime_test_data/shared_phylotypes/shared_otus
- qiime_test_data/simsam
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- qiime_test_data/single_rarefaction
- qiime_test_data/sort_otu_table
- qiime_test_data/split_fasta_on_sample_ids
- qiime_test_data/split_fasta_on_sample_ids/out
- qiime_test_data/split_libraries
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- qiime_test_data/split_libraries/Split_Library_Output_comma_separated
- qiime_test_data/split_libraries/Split_Library_Run1_Output
- qiime_test_data/split_libraries/Split_Library_Run2_Output
- qiime_test_data/split_libraries/split_Library_output_8bp
- qiime_test_data/split_libraries/split_libraries_output_revprimer
- qiime_test_data/split_libraries_fastq
- qiime_test_data/split_libraries_fastq/slout_q20
- qiime_test_data/split_libraries_fastq/slout_single_sample_q20
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- qiime_test_data/start_parallel_jobs
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- qiime_test_data/subsample_fasta
- qiime_test_data/summarize_otu_by_cat
- qiime_test_data/summarize_taxa
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- qiime_test_data/summarize_taxa_through_plots/taxa_summary/taxa_summary_plots/charts
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- qiime_test_data/summarize_taxa_through_plots/taxa_summary_by_treatment
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- qiime_test_data/supervised_learning
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- qiime_test_data/supervised_learning/ml_cv10
- qiime_test_data/supervised_learning/ml_ntree1000
- qiime_test_data/supervised_learning/rarefied_tables
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- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_1_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_2_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_3_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_4_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_5_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_6_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_7_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_8_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_cv10/sl_rarefaction_100_9_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_0_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_1_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_2_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_3_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_4_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_5_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_6_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_7_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_8_Treatment
- qiime_test_data/supervised_learning/sl_rarefied_tables_oob/sl_rarefaction_100_9_Treatment
- qiime_test_data/transform_coordinate_matrices
- qiime_test_data/transform_coordinate_matrices/mc_procrustes_output
- qiime_test_data/transform_coordinate_matrices/procrustes_output
- qiime_test_data/tree_compare
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- qiime_test_data/trflp_file_to_otu_table
- qiime_test_data/truncate_fasta_qual_files
- qiime_test_data/truncate_fasta_qual_files/filtered_seqs
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- qiime_test_data/unweight_fasta
- qiime_test_data/upgma_cluster
- qiime_test_data/upgma_cluster/beta_div_folder
- qiime_test_data/upgma_cluster/beta_div_folder_results
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- .pc/fix_t_test_bug
- .pc/fix_t_test_bug/qiime
- .pc/fix_t_test_bug/scripts
- .pc/fix_t_test_bug/tests
- doc/_build
- qiime/support_files/denoiser/bin
- qiime/support_files/html_templates
- qiime_tutorial
- qiime_tutorial/18S_tutorial_files
- web
- web/home_static
- web/home_static/images
- web/home_static/nih-cloud-apr2012
- web/home_static/nih-cloud-apr2012/NIHCloudDemo_Complete_files
- web/home_static/nih-cloud-apr2012/NIHCloudDemo_Fast_files
- web/home_static/nih-cloud-apr2012/Timing_files
- web/home_static/nih-cloud-apr2012/VariableRegionPositionBoundaries_files
- files modified:
- .pc/applied-patches
added
removed
qiime_test_data/core_diversity_analyses/core_output/arare_max20/day_chao1.txt
