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Viewing changes to qiime_test_data/pick_closed_reference_otus/otus_usearch/usearch_ref_picked_otus/seqs_otus.log

  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-06-17 18:28:26 UTC
  • mfrom: (9.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20130617182826-376az5ad080a0sfe
Tags: 1.7.0+dfsg-1
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qiime_test_data/pick_closed_reference_otus/otus_usearch/usearch_ref_picked_otus/seqs_otus.log
 
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UsearchReferenceOtuPicker parameters:
 
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Application:usearch
 
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abundance_skew:2.0
 
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chimeras_retention:union
 
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cluster_size_filtering:True
 
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count_start:0
 
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db_filepath:None
 
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de_novo_chimera_detection:True
 
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derep_fullseq:False
 
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global_alignment:True
 
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label_prefix:
 
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label_suffix:
 
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maxrejects:500
 
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minlen:64
 
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minsize:4
 
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output_dir:/Users/caporaso/code/Qiime/qiime_test_data/pick_reference_otus_through_otu_table/otus_usearch//usearch_ref_picked_otus
 
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perc_id_blast:0.97
 
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percent_id:0.97
 
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percent_id_err:0.97
 
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reference_chimera_detection:False
 
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remove_usearch_logs:False
 
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retain_label_as_comment:False
 
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rev:False
 
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save_intermediate_files:True
 
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sizein:True
 
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sizeout:True
 
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slots:16769023
 
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suppress_new_clusters:True
 
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verbose:False
 
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w:12
 
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Num OTUs:49
 
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Num failures:698
 
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Reference database for OTU picking: /Users/caporaso/code/Qiime/qiime_test_data/pick_reference_otus_through_otu_table/refseqs.fna
 
 
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