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usearch --cluster /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results/len_sorted.fasta --slots 16769023 --sizeout --uc /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results/derep.uc --w 64 --seedsout /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results/dereplicated_seqs.fasta --maxrejects 500 --log /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results/derep.log --minlen 64 --derep_subseq
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Started Thu Oct 18 14:21:57 2012
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Hash size 16769023 (16.8M)
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Fast search (U-sorting) enabled
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Similarity computed from a global alignment
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Word-counting heuristics:
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Word length for database index 64
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U-sorted search termination:
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Word count rejection enabled
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Filename /Users/jrideout/dev/qiime_test_data/pick_otus/usearch_qf_results/len_sorted.fasta
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Sequence type nucelotide
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10.00 Open penalty (internal gaps)
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0.50 Open penalty (end gaps)
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1.00 Ext. penalty (internal gaps)
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0.50 Ext. penalty (end gaps)
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Fast alignment heuristics:
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HSP seed word length 5
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Exact word seeds (neighborhoods disabled)
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00:00 203Mb Result: 131 clusters, avg size 1.2, avg id. 100.0%
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Throughput 0.0 seqs/sec
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Avg cluster size 1.2 seqs
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Id Allocs Frees Pct Bytes
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---------------- ---------- ---------- ------ ------------
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seqdb 265 0 88.3% 13Mb
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mx_h 273 0 2.1% 297.0kb
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myutils 4 0 0.9% 128.0kb
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hspfinder 398 199 0.3% 43.4kb
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windex 562 2 0.1% 13.6kb
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comppath 1 0 0.0% 4344.0b
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---------------- ---------- ---------- ------ ------------
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Total 1528 201 100.0% 14Mb
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Finished Thu Oct 18 14:21:57 2012