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<div class="title">IMSAlphabetTextParser.h</div> </div>
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<a href="IMSAlphabetTextParser_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
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<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
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<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
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<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
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<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
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<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
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<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
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<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
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<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
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<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
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<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
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<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
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<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
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<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Stephan Aiche $</span></div>
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<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $</span></div>
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<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> </div>
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<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor">#ifndef OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_IMSALPHABETTEXTPARSER_H</span></div>
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<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_IMSALPHABETTEXTPARSER_H</span></div>
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<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor"></span></div>
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<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="IMSAlphabetParser_8h.html">OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetParser.h</a>></span></div>
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<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
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<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="keyword">namespace </span>OpenMS</div>
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<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> {</div>
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<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
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<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">namespace </span>ims</div>
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<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  {</div>
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<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
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<div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html"> 53</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html">IMSAlphabetTextParser</a> :</div>
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<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html">IMSAlphabetParser</a><></div>
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<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  {</div>
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<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="keyword">private</span>:</div>
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<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#a3f52f035ae13ce5697fd7ea8c66ece29"> 60</a></span>  <a class="code" href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html#ab6acf6aaa4bab8b5a1349a7318aa9ad4">ContainerType</a> <a class="code" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#a3f52f035ae13ce5697fd7ea8c66ece29">elements_</a>;</div>
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<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> <span class="keyword">public</span>:</div>
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<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#ac874e1fcce3489e85ff3d3417cd97d1f"> 67</a></span>  <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html#ab6acf6aaa4bab8b5a1349a7318aa9ad4">ContainerType</a> & <a class="code" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#ac874e1fcce3489e85ff3d3417cd97d1f">getElements</a>() { <span class="keywordflow">return</span> elements_; }</div>
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<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div>
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<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> parse(std::istream & is);</div>
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<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  };</div>
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<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> </div>
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<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  } <span class="comment">// namespace ims</span></div>
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<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> } <span class="comment">// namespace OpenMS</span></div>
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<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> </div>
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<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="preprocessor">#endif // OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_ALPHABETTEXTPARSER_H</span></div>
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<div class="ttc" id="classOpenMS_1_1ims_1_1IMSAlphabetTextParser_html_ac874e1fcce3489e85ff3d3417cd97d1f"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#ac874e1fcce3489e85ff3d3417cd97d1f">OpenMS::ims::IMSAlphabetTextParser::getElements</a></div><div class="ttdeci">virtual ContainerType & getElements()</div><div class="ttdef"><b>Definition:</b> IMSAlphabetTextParser.h:67</div></div>
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<div class="ttc" id="classOpenMS_1_1ims_1_1IMSAlphabetTextParser_html_a3f52f035ae13ce5697fd7ea8c66ece29"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#a3f52f035ae13ce5697fd7ea8c66ece29">OpenMS::ims::IMSAlphabetTextParser::elements_</a></div><div class="ttdeci">ContainerType elements_</div><div class="ttdef"><b>Definition:</b> IMSAlphabetTextParser.h:60</div></div>
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<div class="ttc" id="classOpenMS_1_1ims_1_1IMSAlphabetParser_html_ab6acf6aaa4bab8b5a1349a7318aa9ad4"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html#ab6acf6aaa4bab8b5a1349a7318aa9ad4">OpenMS::ims::IMSAlphabetParser<>::ContainerType</a></div><div class="ttdeci">std::map< std::string, double > ContainerType</div><div class="ttdef"><b>Definition:</b> IMSAlphabetParser.h:70</div></div>
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<div class="ttc" id="IMSAlphabetParser_8h_html"><div class="ttname"><a href="IMSAlphabetParser_8h.html">IMSAlphabetParser.h</a></div></div>
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<div class="ttc" id="classOpenMS_1_1ims_1_1IMSAlphabetTextParser_html"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html">OpenMS::ims::IMSAlphabetTextParser</a></div><div class="ttdoc">Implements abstract AlphabetParser to read data from the plain text format. </div><div class="ttdef"><b>Definition:</b> IMSAlphabetTextParser.h:53</div></div>
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<div class="ttc" id="classOpenMS_1_1ims_1_1IMSAlphabetParser_html"><div class="ttname"><a href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html">OpenMS::ims::IMSAlphabetParser</a></div><div class="ttdoc">An abstract templatized parser to load the data that is used to initialize Alphabet objects...</div><div class="ttdef"><b>Definition:</b> IMSAlphabetParser.h:64</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:15 using doxygen 1.8.5</font></TD>
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