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  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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source/TEST/data/MzTabFile_merged.mzTab
 
1
MTD     mzTab-version   1.0.0
 
2
MTD     PRIDE_1234-title        mzTab iTRAQ test
 
3
MTD     PRIDE_1234-contact[1]-name      Johannes
 
4
MTD     PRIDE_1234-contact[2]-name      Mathias
 
5
MTD     PRIDE_1234-quantification_method        [MS,MS:1001837,"iTraq quantitation analysis",]
 
6
MTD     PRIDE_1234-protein-quantification_unit  [MS,MS:1001134,"protein ratio",]
 
7
MTD     PRIDE_1234-peptide-quantification_unit  [MS,MS:1001132,"peptide ratio",]
 
8
MTD     PRIDE_1234-sub[1]-description   Healthy human liver tissue
 
9
MTD     PRIDE_1234-sub[1]-quantification_reagent        [MOD,MOD:01490,"iTRAQ4plex-114 reporter+balance reagent O3-acylated serine",]
 
10
MTD     PRIDE_1234-sub[2]-description   Human hepatocellular carcinoma sample.
 
11
MTD     PRIDE_1234-sub[2]-quantification_reagent        [MOD,MOD:01497,"iTRAQ4plex-115 reporter+balance reagent O3-acylated serine",]
 
12
MTD     PRIDE_1234-sub[3]-description   Heptitis C infected liver tissue
 
13
MTD     PRIDE_1234-sub[3]-quantification_reagent        [MOD,MOD:01499,"iTRAQ4plex-116 reporter+balance reagent acylated residue",]
 
14
MTD     PRIDE_1234-sub[4]-description   Fatty liver degeneration
 
15
MTD     PRIDE_1234-sub[4]-quantification_reagent        [MOD,MOD:01506,"iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue",]
 
16
 
 
17
MTD     file_1-title    mzTab SILAC test
 
18
MTD     file_1-quantification_method    [MS,MS:1001837,"SILAC quantitation analysis",]
 
19
MTD     file_1-protein-quantification_unit      [MS,MS:1001134,"protein ratio",]
 
20
MTD     file_1-peptide-quantification_unit      [MS,MS:1001132,"peptide ratio",]
 
21
MTD     file_1-sub[1]-description       file_1_heavy
 
22
MTD     file_1-sub[1]-quantification_reagent    [MOD,MOD:00544,"6x(13)C labeled residue",]
 
23
MTD     file_1-sub[2]-description       file_1_light
 
24
MTD     file_1-sub[2]-quantification_reagent    [MS,MS:1002038,"unlabeled sample",]
 
25
 
 
26
PRH     accession       unit_id description     taxid   species database        database_version        search_engine   search_engine_score     reliability     num_peptides    num_peptides_distinct   num_peptides_unambiguous        ambiguity_members       modifications   uri     go_terms        protein_coverage        protein_abundance_sub[1]        protein_abundance_stdev_sub[1]  protein_abundance_std_error_sub[1]      protein_abundance_sub[2]        protein_abundance_stdev_sub[2]  protein_abundance_std_error_sub[2]      protein_abundance_sub[3]        protein_abundance_stdev_sub[3]  protein_abundance_std_error_sub[3]      protein_abundance_sub[4]        protein_abundance_stdev_sub[4]  protein_abundance_std_error_sub[4]
 
27
PRT     gi|10181184     PRIDE_1234      Albumin 9606    Homo sapiens(Human)     NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",140]      1       4       2       1       null    5-UNIMOD:214,27-UNIMOD:214,13-UNIMOD:35,29-UNIMOD:21    http://ebi.ac.uk/pride/experiment/1234/protein/193ttp://ebi.ac.uk/pride/experiment/1234/protein/193     GO:0008299|GO:0016740   0.2     1       null    null    7265.31988      6346.894427     null    7265.31988      6346.894427     null    7265.31988      6346.894427     null
 
28
PRT     gi|1050551      PRIDE_1234      Thyroxin        9606    Homo sapiens(Human)     NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",70]       3       2       1       1       gi|1049108      0-UNIMOD:214    http://ebi.ac.uk/pride/experiment/1234/protein/193ttp://ebi.ac.uk/pride/experiment/1234/protein/191     null    0.1     1       null    null    3447.020481     1962.7157       null    3447.020481     1962.7157       null    3447.020481     1962.7157       null
 
29
PRT     IPI00004942     file_1  Name4   9606    Homo sapiens    IPI     3.11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    1       1       null    null    null    null    GO:0005488|GO:0005515|GO:0008270|GO:0043167|GO:0043169|GO:0046872|GO:0046914    0.09    1       null    null    5.6789  1.2     null    null    null    null    null    null    null
 
30
PRT     IPI00003501     file_1  Retikulin       9606    Homo sapiens    IPI     3.11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    1       1       null    null    null    null    GO:0001619|GO:0004871|GO:0004872|GO:0004888|GO:0004930|GO:0005488|GO:0008289|GO:0045125|GO:0060089      0.027   1       null    null    0.3456  0.34    null    null    null    null    null    null    null
 
31
PRT     IPI00218319     file_1  Albumin 9606    Homo sapiens    IPI     3.11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    10      1       null    IPI00013991,IPI00220709,CON_00703268,IPI00646748,IPI00910712,IPI00909308,IPI00926427    null    null    GO:0003779|GO:0005198|GO:0005488|GO:0005515|GO:0008092|GO:0008307       0.031   1       null    null    1.2345  0.123   null    null    null    null    null    null    null
 
32
PRT     IPI00000980     file_1  Dickkopf1       9606    Homo sapiens    IPI     3.11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    1       1       null    IPI00893222     53[MS, MS:1001875,"modification probability",0]-MOD:00016       null    GO:0005215|GO:0005488|GO:0005515|GO:0008320|GO:0008565|GO:0015399|GO:0015405|GO:0015450|GO:0022804|GO:0022857|GO:0022884|GO:0022891|GO:0022892  0.042   1       null    null    0.5678  0.05    null    null    null    null    null    null    null
 
33
PRT     IPI00002824     file_1  Thyroxin        9606    Homo sapiens    IPI     3.11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    1       1       null    IPI00793531,IPI00791139 null    null    GO:0005488|GO:0008270|GO:0043167|GO:0043169|GO:0046872|GO:0046914       0.051   1       null    null    2.3456  0.12    null    null    null    null    null    null    null
 
34
 
 
35
PEH     sequence        accession       unit_id unique  database        database_version        search_engine   search_engine_score     reliability     modifications   retention_time  charge  mass_to_charge  uri     spectra_ref     peptide_abundance_sub[1]        peptide_abundance_stdev_sub[1]  peptide_abundance_std_error_sub[1]      peptide_abundance_sub[2]        peptide_abundance_stdev_sub[2]  peptide_abundance_std_error_sub[2]      peptide_abundance_sub[3]        peptide_abundance_stdev_sub[3]  peptide_abundance_std_error_sub[3]      peptide_abundance_sub[4]        peptide_abundance_stdev_sub[4]  peptide_abundance_std_error_sub[4]
 
36
PEP     NILNELFQR       gi|10181184     PRIDE_1234      1       NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",35]       1       0-UNIMOD:214,8-UNIMOD:35        20.8    2       500     null    null    1       null    null    4491.221363     null    null    4491.221363     null    null    4491.221363     null    null
 
37
PEP     NILNELFQR       gi|10181184     PRIDE_1234      1       NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       2       0-UNIMOD:214    21.5    4       250     null    null    1       null    null    5903.60986      null    null    5903.60986      null    null    5903.60986      null    null
 
38
PEP     QGIFQVVISR      gi|10181184     PRIDE_1234      0       NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",40]       1       0-UNIMOD:214,6-UNIMOD:21        10.2    3       200     null    null    1       null    null    16500.75069     null    null    16500.75069     null    null    16500.75069     null    null
 
39
PEP     QGIFQVVISR      gi|10181184     PRIDE_1234      0       NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",35]       2       0-UNIMOD:214,2-UNIMOD:21        7.3     2       400     null    null    1       null    null    2165.697588     null    null    2165.697588     null    null    2165.697588     null    null
 
40
PEP     EDTTSILPK       gi|1050551      PRIDE_1234      1       NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",50]       1       0-UNIMOD:214    60.2    4       200     null    null    1       null    null    2059.1709       null    null    2059.1709       null    null    2059.1709       null    null
 
41
PEP     EDTTSILPK       gi|1050551      PRIDE_1234      1       NCBI NR 21.06.2011      [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",20]       3       0-UNIMOD:214    64.1    3       300     null    null    1       null    null    4834.870061     null    null    4834.870061     null    null    4834.870061     null    null
 
42
PEP     IQLVEEELDR      IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    null    null    null    null    null    null    1       null    null    1.2345  0.123   null    null    null    null    null    null    null
 
43
PEP     IQLVEEELDRAQER  IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",35]       null    null    null    null    null    null    null    1       null    null    0.5678  0.05    null    null    null    null    null    null    null
 
44
PEP     KLVILEGELER     IPI00010779     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",46]       null    null    null    null    null    null    null    1       null    null    2.3456  0.12    null    null    null    null    null    null    null
 
45
PEP     KQAEDRCK        IPI00513698     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",100]      null    null    null    null    null    null    null    1       null    null    0.3456  0.34    null    null    null    null    null    null    null
 
46
PEP     LATALQK IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",120]      null    null    null    null    null    null    null    1       null    null    5.6789  1.2     null    null    null    null    null    null    null
 
47
PEP     LATALQKLEEAEK   IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    null    null    null    null    null    null    1       null    null    1.2345  0.123   null    null    null    null    null    null    null
 
48
PEP     LEEAEKAADESER   IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",35]       null    null    null    null    null    null    null    1       null    null    0.5678  0.05    null    null    null    null    null    null    null
 
49
PEP     LVILEGELER      IPI00010779     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",46]       null    null    null    null    null    null    null    1       null    null    2.3456  0.12    null    null    null    null    null    null    null
 
50
PEP     RIQLVEEELDR     IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",100]      null    null    null    null    null    null    null    1       null    null    0.3456  0.34    null    null    null    null    null    null    null
 
51
PEP     RIQLVEEELDRAQER IPI00218319     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",120]      null    6-MOD:00016     null    null    null    null    null    1       null    null    5.6789  1.2     null    null    null    null    null    null    null
 
52
PEP     GADPGMPEPTVLSLLWG       IPI00000980     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",30]       null    null    null    null    null    null    null    1       null    null    1.2345  0.123   null    null    null    null    null    null    null
 
53
PEP     GFGYGQGAGALVHAQ IPI00002824     file_1  0       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",35]       null    null    null    null    null    null    null    1       null    null    0.5678  0.05    null    null    null    null    null    null    null
 
54
PEP     GMHMPTSPTFLEGNTVV       IPI00003501     file_1  1       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",46]       null    null    null    null    null    null    null    1       null    null    2.3456  0.12    null    null    null    null    null    null    null
 
55
PEP     TYASGYAHYEEQEN  IPI00004942     file_1  1       IPI     3,11    [MS,MS:1001207,"Mascot",]       [MS,MS:1001171,"Mascot:score",100]      null    null    null    null    null    null    null    1       null    null    0.3456  0.34    null    null    null    null    null    null    null
 
56
 
 
57
SMH     identifier      unit_id chemical_formula        smiles  inchi_key       description     mass_to_charge  charge  retention_time  taxid   species database        database_version        reliability     uri     spectra_ref     search_engine   search_engine_score     modifications   smallmolecule_abundance_sub[1]  smallmolecule_abundance_stdev_sub[1]    smallmolecule_abundance_std_error_sub[1]        smallmolecule_abundance_sub[2]  smallmolecule_abundance_stdev_sub[2]    smallmolecule_abundance_std_error_sub[2]        smallmolecule_abundance_sub[3]  smallmolecule_abundance_stdev_sub[3]    smallmolecule_abundance_std_error_sub[3]        smallmolecule_abundance_sub[4]  smallmolecule_abundance_stdev_sub[4]    smallmolecule_abundance_std_error_sub[4]
 
58
SML     ID_1    file_1  null    null    null    null    254.4   2       20.7    9606    Homo sapiens (Human)    null    null    2       null    null    [,,"SpectraSt",]        null    null    null    null    null    null    null    null    null    null    null    null    null    null