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<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_d1695c75ee0aa48d87e52f45c7decd7a.html">FORMAT</a></li><li class="navelem"><a class="el" href="dir_e3cfd30209955a8faf482f155ddb826e.html">HANDLERS</a></li> </ul>
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<div class="title">PTMXMLHandler.h</div> </div>
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<a href="PTMXMLHandler_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
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<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
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<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
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<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
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<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
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<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
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<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
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<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
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<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
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<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
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<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
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<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
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<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
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<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
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<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
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<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
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<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
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<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
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<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
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<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
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<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
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<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
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<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Andreas Bertsch $</span></div>
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<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: $</span></div>
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<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
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<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H</span></div>
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<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H</span></div>
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<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
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<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="XMLHandler_8h.html">OpenMS/FORMAT/HANDLERS/XMLHandler.h</a>></span></div>
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<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> </div>
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<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <vector></span></div>
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<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <map></span></div>
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<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <fstream></span></div>
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<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div>
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<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">namespace </span>OpenMS</div>
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<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> {</div>
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<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keyword">namespace </span>Internal</div>
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<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  {</div>
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<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html"> 51</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html">PTMXMLHandler</a> :</div>
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<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a></div>
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<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  {</div>
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<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="keyword">public</span>:</div>
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<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <a class="code" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html">PTMXMLHandler</a>(std::map<<a class="code" href="classOpenMS_1_1String.html">String</a>, std::pair<String, String> > & ptm_informations, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & filename);</div>
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<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
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<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html">PTMXMLHandler</a>();</div>
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<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> </div>
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<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="keywordtype">void</span> writeTo(std::ostream & os);</div>
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<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> </div>
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<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="comment">// Docu in base class</span></div>
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<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> endElement(<span class="keyword">const</span> XMLCh * <span class="keyword">const</span> <span class="comment">/*uri*/</span>, <span class="keyword">const</span> XMLCh * <span class="keyword">const</span> <span class="comment">/*local_name*/</span>, <span class="keyword">const</span> XMLCh * <span class="keyword">const</span> qname);</div>
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<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div>
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<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="comment">// Docu in base class</span></div>
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<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> startElement(<span class="keyword">const</span> XMLCh * <span class="keyword">const</span> <span class="comment">/*uri*/</span>, <span class="keyword">const</span> XMLCh * <span class="keyword">const</span> <span class="comment">/*local_name*/</span>, <span class="keyword">const</span> XMLCh * <span class="keyword">const</span> qname, <span class="keyword">const</span> xercesc::Attributes & attributes);</div>
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<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> </div>
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<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="comment">// Docu in base class</span></div>
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<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> characters(<span class="keyword">const</span> XMLCh * <span class="keyword">const</span> chars, <span class="keyword">const</span> XMLSize_t <span class="comment">/*length*/</span>);</div>
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<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
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<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="keyword">protected</span>:</div>
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<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#affd1b8e4c2486c7bce6fdcbd3193fa4b"> 74</a></span>  std::map<String, std::pair<String, String> > & <a class="code" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#affd1b8e4c2486c7bce6fdcbd3193fa4b">ptm_informations_</a>;</div>
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<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a4efa4aca7642864fed4e7e4cca9e2a79"> 75</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> name_, <a class="code" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a4efa4aca7642864fed4e7e4cca9e2a79">tag_</a>, composition_;</div>
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<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a1bfa17c1d1ff996fb98a87ebdeec0fac"> 76</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a1bfa17c1d1ff996fb98a87ebdeec0fac">open_tag_</a>;</div>
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<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  };</div>
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<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> </div>
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<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  } <span class="comment">// namespace Internal</span></div>
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<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div>
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<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> } <span class="comment">// namespace OpenMS</span></div>
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<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
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<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> <span class="preprocessor">#endif // OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H</span></div>
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<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
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<div class="ttc" id="classOpenMS_1_1Internal_1_1XMLHandler_html"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1XMLHandler.html">OpenMS::Internal::XMLHandler</a></div><div class="ttdoc">Base class for XML handlers. </div><div class="ttdef"><b>Definition:</b> XMLHandler.h:89</div></div>
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<div class="ttc" id="classOpenMS_1_1Internal_1_1PTMXMLHandler_html_a1bfa17c1d1ff996fb98a87ebdeec0fac"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a1bfa17c1d1ff996fb98a87ebdeec0fac">OpenMS::Internal::PTMXMLHandler::open_tag_</a></div><div class="ttdeci">bool open_tag_</div><div class="ttdef"><b>Definition:</b> PTMXMLHandler.h:76</div></div>
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<div class="ttc" id="classOpenMS_1_1Internal_1_1PTMXMLHandler_html_affd1b8e4c2486c7bce6fdcbd3193fa4b"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#affd1b8e4c2486c7bce6fdcbd3193fa4b">OpenMS::Internal::PTMXMLHandler::ptm_informations_</a></div><div class="ttdeci">std::map< String, std::pair< String, String > > & ptm_informations_</div><div class="ttdef"><b>Definition:</b> PTMXMLHandler.h:74</div></div>
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<div class="ttc" id="classOpenMS_1_1Internal_1_1PTMXMLHandler_html"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html">OpenMS::Internal::PTMXMLHandler</a></div><div class="ttdoc">Handler that is used for parsing PTMXML data. </div><div class="ttdef"><b>Definition:</b> PTMXMLHandler.h:51</div></div>
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<div class="ttc" id="XMLHandler_8h_html"><div class="ttname"><a href="XMLHandler_8h.html">XMLHandler.h</a></div></div>
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<div class="ttc" id="classOpenMS_1_1Internal_1_1PTMXMLHandler_html_a4efa4aca7642864fed4e7e4cca9e2a79"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a4efa4aca7642864fed4e7e4cca9e2a79">OpenMS::Internal::PTMXMLHandler::tag_</a></div><div class="ttdeci">String tag_</div><div class="ttdef"><b>Definition:</b> PTMXMLHandler.h:75</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:20 using doxygen 1.8.5</font></TD>
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