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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pro-attribs">Protected Attributes</a> |
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<a href="#pri-methods">Private Member Functions</a> |
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<a href="classOpenMS_1_1DocumentIDTagger-members.html">List of all members</a> </div>
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<div class="title">DocumentIDTagger Class Reference<div class="ingroups"><a class="el" href="group__Metadata.html">Metadata</a></div></div> </div>
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<p>Tags <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> file containers with a DocumentID.
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<a href="classOpenMS_1_1DocumentIDTagger.html#details">More...</a></p>
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<p><code>#include <<a class="el" href="DocumentIDTagger_8h_source.html">OpenMS/METADATA/DocumentIDTagger.h</a>></code></p>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:a6baf8ed1574c57767e904d42acc2e641"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a6baf8ed1574c57767e904d42acc2e641">DocumentIDTagger</a> (<a class="el" href="classOpenMS_1_1String.html">String</a> toolname)</td></tr>
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<tr class="memdesc:a6baf8ed1574c57767e904d42acc2e641"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a6baf8ed1574c57767e904d42acc2e641">More...</a><br/></td></tr>
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<tr class="memitem:ab4da81bf157b2d1f1b3a87e4e58999b5"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#ab4da81bf157b2d1f1b3a87e4e58999b5">DocumentIDTagger</a> (const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> &source)</td></tr>
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<tr class="memdesc:ab4da81bf157b2d1f1b3a87e4e58999b5"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#ab4da81bf157b2d1f1b3a87e4e58999b5">More...</a><br/></td></tr>
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<tr class="separator:ab4da81bf157b2d1f1b3a87e4e58999b5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ab4992186dec84998a7cd9ea6b27878c7"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#ab4992186dec84998a7cd9ea6b27878c7">~DocumentIDTagger</a> ()</td></tr>
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<tr class="memdesc:ab4992186dec84998a7cd9ea6b27878c7"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#ab4992186dec84998a7cd9ea6b27878c7">More...</a><br/></td></tr>
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<tr class="memitem:a62bed24c0268915010c1b0d89ea82d3c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a62bed24c0268915010c1b0d89ea82d3c">operator=</a> (const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> &source)</td></tr>
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<tr class="memdesc:a62bed24c0268915010c1b0d89ea82d3c"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#a62bed24c0268915010c1b0d89ea82d3c">More...</a><br/></td></tr>
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<tr class="separator:a62bed24c0268915010c1b0d89ea82d3c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a8a0a7dc275ff436efde201c3d2322eff"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a8a0a7dc275ff436efde201c3d2322eff">operator==</a> (const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> &source) const </td></tr>
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<tr class="memdesc:a8a0a7dc275ff436efde201c3d2322eff"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#a8a0a7dc275ff436efde201c3d2322eff">More...</a><br/></td></tr>
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<tr class="memitem:a41d9130262cc1b870b7dae7c9a04d535"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a41d9130262cc1b870b7dae7c9a04d535">operator!=</a> (const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> &source) const </td></tr>
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<tr class="memdesc:a41d9130262cc1b870b7dae7c9a04d535"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#a41d9130262cc1b870b7dae7c9a04d535">More...</a><br/></td></tr>
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<tr class="memitem:a700459da9be549759a0147e8049e2cb4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a700459da9be549759a0147e8049e2cb4">getPoolFile</a> () const </td></tr>
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<tr class="memdesc:a700459da9be549759a0147e8049e2cb4"><td class="mdescLeft"> </td><td class="mdescRight">Return the file used as ID pool. <a href="#a700459da9be549759a0147e8049e2cb4">More...</a><br/></td></tr>
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<tr class="memitem:a17f77efff59d80ffa4d1296a8e1b6eef"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a17f77efff59d80ffa4d1296a8e1b6eef">setPoolFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &file)</td></tr>
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<tr class="memdesc:a17f77efff59d80ffa4d1296a8e1b6eef"><td class="mdescLeft"> </td><td class="mdescRight">Set the file used as ID pool. <a href="#a17f77efff59d80ffa4d1296a8e1b6eef">More...</a><br/></td></tr>
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<tr class="memitem:a26dcd47cc5aeecd27330b7813b6056b2"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a26dcd47cc5aeecd27330b7813b6056b2">tag</a> (<a class="el" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a> &map) const </td></tr>
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<tr class="memdesc:a26dcd47cc5aeecd27330b7813b6056b2"><td class="mdescLeft"> </td><td class="mdescRight">Tags any structure which is derived from <a class="el" href="classOpenMS_1_1DocumentIdentifier.html" title="Manage source document information. ">DocumentIdentifier</a> with a unique tag. <a href="#a26dcd47cc5aeecd27330b7813b6056b2">More...</a><br/></td></tr>
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<tr class="memitem:aa5645b19947f67e4a944d4299d2196f6"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#aa5645b19947f67e4a944d4299d2196f6">countFreeIDs</a> (<a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &free) const </td></tr>
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<tr class="memdesc:aa5645b19947f67e4a944d4299d2196f6"><td class="mdescLeft"> </td><td class="mdescRight">return the number of available IDs in the pool. <a href="#aa5645b19947f67e4a944d4299d2196f6">More...</a><br/></td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
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Protected Attributes</h2></td></tr>
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<tr class="memitem:a4fb4db0bd3d688c678693d825fe0147f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a4fb4db0bd3d688c678693d825fe0147f">toolname_</a></td></tr>
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<tr class="memdesc:a4fb4db0bd3d688c678693d825fe0147f"><td class="mdescLeft"> </td><td class="mdescRight">name of the calling TOPP tool <a href="#a4fb4db0bd3d688c678693d825fe0147f">More...</a><br/></td></tr>
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<tr class="memitem:a10cf1f48bfc918d728b4d15ee95165a0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a10cf1f48bfc918d728b4d15ee95165a0">pool_file_</a></td></tr>
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<tr class="memdesc:a10cf1f48bfc918d728b4d15ee95165a0"><td class="mdescLeft"> </td><td class="mdescRight">location of the ID pool <a href="#a10cf1f48bfc918d728b4d15ee95165a0">More...</a><br/></td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
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Private Member Functions</h2></td></tr>
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<tr class="memitem:a0f26016a2e53abdf49c958c8e5f13178"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a0f26016a2e53abdf49c958c8e5f13178">DocumentIDTagger</a> ()</td></tr>
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<tr class="memdesc:a0f26016a2e53abdf49c958c8e5f13178"><td class="mdescLeft"> </td><td class="mdescRight">Constructor (declared away) <a href="#a0f26016a2e53abdf49c958c8e5f13178">More...</a><br/></td></tr>
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<tr class="memitem:a2a5facda334ec0e5bd2c3dc677c8d758"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a2a5facda334ec0e5bd2c3dc677c8d758">getID_</a> (<a class="el" href="classOpenMS_1_1String.html">String</a> &id, <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &free, bool idcount_only) const </td></tr>
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<tr class="memdesc:a2a5facda334ec0e5bd2c3dc677c8d758"><td class="mdescLeft"> </td><td class="mdescRight">retrieve an ID from the pool <a href="#a2a5facda334ec0e5bd2c3dc677c8d758">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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<div class="textblock"><p>Tags <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> file containers with a DocumentID. </p>
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<p>Intended usage is from within a TOPP tool. An instance of this class is present in <a class="el" href="classOpenMS_1_1TOPPBase.html" title="Base class for TOPP applications. ">TOPPBase</a> and can be used by all derived TOPP tools to assign a unique ID which is fetched from an ID pool in ./share/OpenMS/IDPool/. </p>
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</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> </td>
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<td class="paramname"></td><td>)</td>
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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<p>Constructor (declared away) </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1String.html">String</a> </td>
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<td class="paramname"><em>toolname</em></td><td>)</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> & </td>
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<td class="paramname"><em>source</em></td><td>)</td>
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<p>Copy constructor. </p>
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<td class="memname">~<a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> </td>
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<td class="paramname"></td><td>)</td>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">bool countFreeIDs </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> & </td>
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<td class="paramname"><em>free</em></td><td>)</td>
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<p>return the number of available IDs in the pool. </p>
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<p>Retrieve the number of available IDs in the pool. Returns true of count was successful, false otherwise (locking error, file creation error ...)</p>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">free</td><td>Number of available identifiers. You should worry if it's 0! </td></tr>
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<td class="memname">bool getID_ </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
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<td class="paramname"><em>id</em>, </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> & </td>
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<p>retrieve an ID from the pool </p>
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<p>Uses boost filelocks to safely retrieve an ID from an ID pool.</p>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">id</td><td>Unique identifier returned from ID pool </td></tr>
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<tr><td class="paramname">free</td><td>Number of available identifiers in ID pool (before this query) </td></tr>
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<tr><td class="paramname">idcount_only</td><td>Only count available identifiers, do NOT retrieve one (the id string will nevertheless be filled)</td></tr>
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<p>Return true if all file operations could be executed successfully (this does not imply there was an ID left over - check free>0) </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> getPoolFile </td>
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<p>Return the file used as ID pool. </p>
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<p>The default ID pool file is in /share/OpenMS/IDPool/IDPool.txt A custom file can be set by setIDPoolFile() </p>
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<td class="memname">bool operator!= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> & </td>
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<td class="paramname"><em>source</em></td><td>)</td>
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<p>Equality operator. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a>& operator= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> & </td>
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<td class="paramname"><em>source</em></td><td>)</td>
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<p>Assignment operator. </p>
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<td class="memname">bool operator== </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a> & </td>
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<td class="paramname"><em>source</em></td><td>)</td>
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<p>Equality operator. </p>
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<td class="memname">void setPoolFile </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
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<td class="paramname"><em>file</em></td><td>)</td>
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<p>Set the file used as ID pool. </p>
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<td class="memname">bool tag </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a> & </td>
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<td class="paramname"><em>map</em></td><td>)</td>
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<p>Tags any structure which is derived from <a class="el" href="classOpenMS_1_1DocumentIdentifier.html" title="Manage source document information. ">DocumentIdentifier</a> with a unique tag. </p>
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<p>Tags any structure which is derived from <a class="el" href="classOpenMS_1_1DocumentIdentifier.html" title="Manage source document information. ">DocumentIdentifier</a> with a unique tag Returns true if ID could be assigned, otherwise an <a class="el" href="classOpenMS_1_1Exception_1_1DepletedIDPool.html" title="Exception used if no more unique document ID's can be drawn from ID pool. ">Exception::DepletedIDPool</a> is thrown</p>
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<dl class="params"><dt>Parameters</dt><dd>
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<table class="params">
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<tr><td class="paramname">map</td><td>Some class (derived from a <a class="el" href="classOpenMS_1_1DocumentIdentifier.html" title="Manage source document information. ">DocumentIdentifier</a> class) which needs a unique id </td></tr>
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<dl class="exception"><dt>Exceptions</dt><dd>
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<table class="exception">
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1DepletedIDPool.html" title="Exception used if no more unique document ID's can be drawn from ID pool. ">Exception::DepletedIDPool</a></td><td>when no identifier (for whatever reason) could be aquired </td></tr>
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<h2 class="groupheader">Member Data Documentation</h2>
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<a class="anchor" id="a10cf1f48bfc918d728b4d15ee95165a0"></a>
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<div class="memitem">
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<td class="mlabels-left">
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> pool_file_</td>
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<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">protected</span></span> </td>
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</div><div class="memdoc">
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<p>location of the ID pool </p>
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<a class="anchor" id="a4fb4db0bd3d688c678693d825fe0147f"></a>
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<div class="memitem">
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<div class="memproto">
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<td class="mlabels-left">
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> toolname_</td>
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<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">protected</span></span> </td>
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</div><div class="memdoc">
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<p>name of the calling TOPP tool </p>
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</div><!-- contents -->
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<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
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<TABLE width="100%" border="0">
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:32 using doxygen 1.8.5</font></TD>
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