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  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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doc/html/structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html
 
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs.html">FeatureFinderAlgorithmPickedHelperStructs</a></li><li class="navelem"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html">IsotopePattern</a></li>  </ul>
 
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<a href="#pub-methods">Public Member Functions</a> &#124;
 
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<a href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern-members.html">List of all members</a>  </div>
 
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<div class="title">FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern Struct Reference</div>  </div>
 
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<p>Helper structure for a found isotope pattern used in <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html" title="FeatureFinderAlgorithm for picked peaks. ">FeatureFinderAlgorithmPicked</a>.  
 
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 <a href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#details">More...</a></p>
 
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<p><code>#include &lt;<a class="el" href="FeatureFinderAlgorithmPickedHelperStructs_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h</a>&gt;</code></p>
 
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Public Member Functions</h2></td></tr>
 
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<tr class="memitem:aecb0d9860846a0d374b520844b75dc44"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#aecb0d9860846a0d374b520844b75dc44">IsotopePattern</a> (<a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> size)</td></tr>
 
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<tr class="memdesc:aecb0d9860846a0d374b520844b75dc44"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor that resizes the internal vectors.  <a href="#aecb0d9860846a0d374b520844b75dc44">More...</a><br/></td></tr>
 
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<tr class="separator:aecb0d9860846a0d374b520844b75dc44"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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Public Attributes</h2></td></tr>
 
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<tr class="memitem:aec70588359757e4c6f30670fc74d2ebe"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#aec70588359757e4c6f30670fc74d2ebe">peak</a></td></tr>
 
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<tr class="memdesc:aec70588359757e4c6f30670fc74d2ebe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Peak index (-1 if peak was not found, -2 if it was removed to improve the isotope fit)  <a href="#aec70588359757e4c6f30670fc74d2ebe">More...</a><br/></td></tr>
 
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<tr class="separator:aec70588359757e4c6f30670fc74d2ebe"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a5ffc5efccefcdddcb7606303d72fa148"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#a5ffc5efccefcdddcb7606303d72fa148">spectrum</a></td></tr>
 
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<tr class="memdesc:a5ffc5efccefcdddcb7606303d72fa148"><td class="mdescLeft">&#160;</td><td class="mdescRight">Spectrum index (undefined if peak index is -1 or -2)  <a href="#a5ffc5efccefcdddcb7606303d72fa148">More...</a><br/></td></tr>
 
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<tr class="separator:a5ffc5efccefcdddcb7606303d72fa148"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:ac102a03577b6512164d6e4ff3cf78df0"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#ac102a03577b6512164d6e4ff3cf78df0">intensity</a></td></tr>
 
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<tr class="memdesc:ac102a03577b6512164d6e4ff3cf78df0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Peak intensity (0 if peak index is -1 or -2)  <a href="#ac102a03577b6512164d6e4ff3cf78df0">More...</a><br/></td></tr>
 
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<tr class="separator:ac102a03577b6512164d6e4ff3cf78df0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a4671707ce0fc9ba23aa8319f67afa141"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#a4671707ce0fc9ba23aa8319f67afa141">mz_score</a></td></tr>
 
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<tr class="memdesc:a4671707ce0fc9ba23aa8319f67afa141"><td class="mdescLeft">&#160;</td><td class="mdescRight">m/z score of peak (0 if peak index is -1 or -2)  <a href="#a4671707ce0fc9ba23aa8319f67afa141">More...</a><br/></td></tr>
 
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<tr class="separator:a4671707ce0fc9ba23aa8319f67afa141"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a7d03330cd21316709f10c3e9ca55f95c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#a7d03330cd21316709f10c3e9ca55f95c">theoretical_mz</a></td></tr>
 
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<tr class="memdesc:a7d03330cd21316709f10c3e9ca55f95c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Theoretical m/z value of the isotope peak.  <a href="#a7d03330cd21316709f10c3e9ca55f95c">More...</a><br/></td></tr>
 
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<tr class="separator:a7d03330cd21316709f10c3e9ca55f95c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a5dbfbed553b8cf7f9ef1bcb2c4ac94ca"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1TheoreticalIsotopePattern.html">TheoreticalIsotopePattern</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#a5dbfbed553b8cf7f9ef1bcb2c4ac94ca">theoretical_pattern</a></td></tr>
 
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<tr class="memdesc:a5dbfbed553b8cf7f9ef1bcb2c4ac94ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Theoretical isotope pattern.  <a href="#a5dbfbed553b8cf7f9ef1bcb2c4ac94ca">More...</a><br/></td></tr>
 
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 
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<div class="textblock"><p>Helper structure for a found isotope pattern used in <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html" title="FeatureFinderAlgorithm for picked peaks. ">FeatureFinderAlgorithmPicked</a>. </p>
 
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</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
 
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          <td class="memname"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html">IsotopePattern</a> </td>
 
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          <td>(</td>
 
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          <td class="paramtype"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&#160;</td>
 
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<p>Constructor that resizes the internal vectors. </p>
 
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          <td class="memname">std::vector&lt;<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&gt; intensity</td>
 
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<p>Peak intensity (0 if peak index is -1 or -2) </p>
 
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a48c8332d7771967946379f577ca3d973">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::findIsotope_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a55abad1b592c5e19bfaddfc9f9c4a43e">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::isotopeScore_()</a>.</p>
 
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          <td class="memname">std::vector&lt;<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&gt; mz_score</td>
 
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<p>m/z score of peak (0 if peak index is -1 or -2) </p>
 
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a48c8332d7771967946379f577ca3d973">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::findIsotope_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a55abad1b592c5e19bfaddfc9f9c4a43e">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::isotopeScore_()</a>.</p>
 
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          <td class="memname">std::vector&lt;<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a>&gt; peak</td>
 
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<p>Peak index (-1 if peak was not found, -2 if it was removed to improve the isotope fit) </p>
 
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a00f443c46b1d9f3485ef02d844b2433d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::extendMassTraces_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a48c8332d7771967946379f577ca3d973">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::findIsotope_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a55abad1b592c5e19bfaddfc9f9c4a43e">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::isotopeScore_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>.</p>
 
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          <td class="memname">std::vector&lt;<a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&gt; spectrum</td>
 
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<p>Spectrum index (undefined if peak index is -1 or -2) </p>
 
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a00f443c46b1d9f3485ef02d844b2433d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::extendMassTraces_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a48c8332d7771967946379f577ca3d973">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::findIsotope_()</a>.</p>
 
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          <td class="memname">std::vector&lt;<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&gt; theoretical_mz</td>
 
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<p>Theoretical m/z value of the isotope peak. </p>
 
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a48c8332d7771967946379f577ca3d973">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::findIsotope_()</a>.</p>
 
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          <td class="memname"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1TheoreticalIsotopePattern.html">TheoreticalIsotopePattern</a> theoretical_pattern</td>
 
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<p>Theoretical isotope pattern. </p>
 
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a00f443c46b1d9f3485ef02d844b2433d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::extendMassTraces_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad47e8e2093326bd3a2476713d538dd9e">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::findBestIsotopeFit_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>.</p>
 
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
 
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