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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="namespaceOpenMS_1_1Math.html">Math</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a></li> </ul>
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<div class="title">GumbelDistributionFitter Class Reference<div class="ingroups"><a class="el" href="group__Math.html">Math</a></div></div> </div>
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<p>Implements a fitter for the Gumbel distribution.
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<p><code>#include <<a class="el" href="GumbelDistributionFitter_8h_source.html">OpenMS/MATH/STATISTICS/GumbelDistributionFitter.h</a>></code></p>
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Classes</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">struct to represent the parameters of a gumbel distribution <a href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html#details">More...</a><br/></td></tr>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:a3b2728fb958e4517882830673834a58f"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a3b2728fb958e4517882830673834a58f">GumbelDistributionFitter</a> ()</td></tr>
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<tr class="memdesc:a3b2728fb958e4517882830673834a58f"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a3b2728fb958e4517882830673834a58f">More...</a><br/></td></tr>
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<tr class="memitem:a0fa7c5f555488fa04db82fc2fb93be26"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a0fa7c5f555488fa04db82fc2fb93be26">~GumbelDistributionFitter</a> ()</td></tr>
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<tr class="memdesc:a0fa7c5f555488fa04db82fc2fb93be26"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a0fa7c5f555488fa04db82fc2fb93be26">More...</a><br/></td></tr>
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<tr class="memitem:af6232115eb2076fd8b59e06aff4b52f8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#af6232115eb2076fd8b59e06aff4b52f8">setInitialParameters</a> (const <a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a> &result)</td></tr>
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<tr class="memdesc:af6232115eb2076fd8b59e06aff4b52f8"><td class="mdescLeft"> </td><td class="mdescRight">sets the gumbel distribution start parameters a and b for the fitting <a href="#af6232115eb2076fd8b59e06aff4b52f8">More...</a><br/></td></tr>
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<tr class="memitem:a3fe89f2a628fc86a009ec21b398e88ee"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a3fe89f2a628fc86a009ec21b398e88ee">fit</a> (std::vector< <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< 2 > > &points)</td></tr>
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<tr class="memdesc:a3fe89f2a628fc86a009ec21b398e88ee"><td class="mdescLeft"> </td><td class="mdescRight">Fits a gumbel distribution to the given data points. <a href="#a3fe89f2a628fc86a009ec21b398e88ee">More...</a><br/></td></tr>
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<tr class="memitem:ab265b3a00cbe57ea859a1f4d6516c0a3"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#ab265b3a00cbe57ea859a1f4d6516c0a3">getGnuplotFormula</a> () const </td></tr>
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<tr class="memdesc:ab265b3a00cbe57ea859a1f4d6516c0a3"><td class="mdescLeft"> </td><td class="mdescRight">returns the gnuplot formula of the fitted gumbel distribution <a href="#ab265b3a00cbe57ea859a1f4d6516c0a3">More...</a><br/></td></tr>
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Protected Member Functions</h2></td></tr>
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<tr class="memitem:a75f8cd8be36d38070f3b68b9503f6744"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a75f8cd8be36d38070f3b68b9503f6744">printState_</a> (size_t iter, gsl_multifit_fdfsolver *s)</td></tr>
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Static Protected Member Functions</h2></td></tr>
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<tr class="memitem:a41a4637d525556591b9eb13211a4323d"><td class="memItemLeft" align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a41a4637d525556591b9eb13211a4323d">gumbelDistributionFitterf_</a> (const gsl_vector *x, void *params, gsl_vector *f)</td></tr>
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<tr class="memitem:a0227a584f0d07c3cebd7b46f0797f4eb"><td class="memItemLeft" align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a0227a584f0d07c3cebd7b46f0797f4eb">gumbelDistributionFitterdf_</a> (const gsl_vector *x, void *params, gsl_matrix *J)</td></tr>
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<tr class="memitem:a58e275acf4979d17d3ee0a172c05da92"><td class="memItemLeft" align="right" valign="top">static int </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a58e275acf4979d17d3ee0a172c05da92">gumbelDistributionFitterfdf_</a> (const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J)</td></tr>
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Protected Attributes</h2></td></tr>
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<tr class="memitem:a78b83252b4b80b32f5e095fb34ca2be9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a78b83252b4b80b32f5e095fb34ca2be9">init_param_</a></td></tr>
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<tr class="memitem:a55a013a0f39455e54dc44a449212324d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a55a013a0f39455e54dc44a449212324d">gnuplot_formula_</a></td></tr>
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Private Member Functions</h2></td></tr>
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<tr class="memitem:a51418524bcfc2fa37f1b2e0048cfb676"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a51418524bcfc2fa37f1b2e0048cfb676">GumbelDistributionFitter</a> (const <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> &rhs)</td></tr>
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<tr class="memdesc:a51418524bcfc2fa37f1b2e0048cfb676"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor (not implemented) <a href="#a51418524bcfc2fa37f1b2e0048cfb676">More...</a><br/></td></tr>
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<tr class="memitem:a27a0bf3560fc87a6bb20ac879f39d7d7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a27a0bf3560fc87a6bb20ac879f39d7d7">operator=</a> (const <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> &rhs)</td></tr>
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<tr class="memdesc:a27a0bf3560fc87a6bb20ac879f39d7d7"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator (not implemented) <a href="#a27a0bf3560fc87a6bb20ac879f39d7d7">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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<div class="textblock"><p>Implements a fitter for the Gumbel distribution. </p>
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<p>This class fits a Gumbel distribution to a number of data points. The results as well as the initial guess are specified using the struct <a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html" title="struct to represent the parameters of a gumbel distribution ">GumbelDistributionFitResult</a>.</p>
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<p>The formula with the fitted parameters can be transformed into a gnuplot formula using <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#ab265b3a00cbe57ea859a1f4d6516c0a3" title="returns the gnuplot formula of the fitted gumbel distribution ">getGnuplotFormula()</a> after fitting.</p>
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<p>The implementation is done using GSL fitting algorithms. </p>
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</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="paramname"></td><td>)</td>
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<p>Default constructor. </p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> </td>
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<td class="paramname"></td><td>)</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> & </td>
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<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Copy constructor (not implemented) </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname"><a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a> fit </td>
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<td class="paramtype">std::vector< <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< 2 > > & </td>
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<td class="paramname"><em>points</em></td><td>)</td>
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<p>Fits a gumbel distribution to the given data points. </p>
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<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">points</td><td>Input parameter which represents the point used for the fitting</td></tr>
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<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1UnableToFit.html" title="Exception used if an error occurred while fitting a model to a given dataset. ">Exception::UnableToFit</a></td><td>is thrown if fitting cannot be performed </td></tr>
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<td class="memname">const <a class="el" href="classOpenMS_1_1String.html">String</a>& getGnuplotFormula </td>
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<p>returns the gnuplot formula of the fitted gumbel distribution </p>
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<td class="memname">static int gumbelDistributionFitterdf_ </td>
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<td class="paramtype">const gsl_vector * </td>
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<td class="paramname"><em>x</em>, </td>
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<td class="paramtype">gsl_matrix * </td>
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<td class="paramname"><em>J</em> </td>
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<td class="memname">static int gumbelDistributionFitterf_ </td>
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<td class="paramtype">const gsl_vector * </td>
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<td class="paramname"><em>x</em>, </td>
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<td class="paramname"><em>params</em>, </td>
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<td class="paramname"><em>f</em> </td>
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<td class="memname">static int gumbelDistributionFitterfdf_ </td>
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<td class="paramtype">const gsl_vector * </td>
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<td class="paramname"><em>x</em>, </td>
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<td class="memname"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a>& operator= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a> & </td>
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<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>assignment operator (not implemented) </p>
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<td class="memname">void printState_ </td>
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<td class="paramtype">size_t </td>
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<td class="paramname"><em>iter</em>, </td>
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<td class="paramname"><em>s</em> </td>
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<td class="memname">void setInitialParameters </td>
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<td class="paramtype">const <a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a> & </td>
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<td class="paramname"><em>result</em></td><td>)</td>
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<p>sets the gumbel distribution start parameters a and b for the fitting </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> gnuplot_formula_</td>
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<td class="memname"><a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html">GumbelDistributionFitResult</a> init_param_</td>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:38 using doxygen 1.8.5</font></TD>
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