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Viewing changes to pyOpenMS/pxds/IncludeExcludeTarget.pxd

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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pyOpenMS/pxds/IncludeExcludeTarget.pxd
 
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from Types cimport *
 
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from libcpp cimport bool
 
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from libcpp.vector cimport vector as libcpp_vector
 
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from CVTermList cimport *
 
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from TargetedExperimentHelper cimport *
 
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cdef extern from "<OpenMS/ANALYSIS/TARGETED/IncludeExcludeTarget.h>" namespace "OpenMS":
 
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    cdef cppclass IncludeExcludeTarget :
 
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        IncludeExcludeTarget() nogil except +
 
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        IncludeExcludeTarget(IncludeExcludeTarget) nogil except +
 
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        void setName(String & name) nogil except +
 
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        String  getName() nogil except +
 
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        void setPeptideRef(String & peptide_ref) nogil except +
 
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        String  getPeptideRef() nogil except +
 
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        void setCompoundRef(String & compound_ref) nogil except +
 
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        String  getCompoundRef() nogil except +
 
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        void setPrecursorMZ(DoubleReal mz) nogil except +
 
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        DoubleReal getPrecursorMZ() nogil except +
 
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        void setPrecursorCVTermList(CVTermList & list_) nogil except +
 
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        void addPrecursorCVTerm(CVTerm & cv_term) nogil except +
 
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        CVTermList  getPrecursorCVTermList() nogil except +
 
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        void setProductMZ(DoubleReal mz) nogil except +
 
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        DoubleReal getProductMZ() nogil except +
 
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        void setProductCVTermList(CVTermList & list_) nogil except +
 
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        void addProductCVTerm(CVTerm & cv_term) nogil except +
 
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        CVTermList  getProductCVTermList() nogil except +
 
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        void setInterpretations(libcpp_vector[ CVTermList ] & interpretations) nogil except +
 
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        libcpp_vector[ CVTermList ]  getInterpretations() nogil except +
 
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        void addInterpretation(CVTermList & interpretation) nogil except +
 
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        void setConfigurations(libcpp_vector[ Configuration ] & configuration) nogil except +
 
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        libcpp_vector[ Configuration ]  getConfigurations() nogil except +
 
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        void addConfiguration(Configuration & configuration) nogil except +
 
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        void setPrediction(CVTermList & prediction) nogil except +
 
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        void addPredictionTerm(CVTerm & prediction) nogil except +
 
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        CVTermList  getPrediction() nogil except +
 
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        void setRetentionTime(RetentionTime rt) nogil except +
 
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        RetentionTime  getRetentionTime() nogil except +
 
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        bool operator==(IncludeExcludeTarget & rhs) nogil except +
 
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        bool operator!=(IncludeExcludeTarget & rhs) nogil except +
 
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        # from CVTermsList
 
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        void setCVTerms(libcpp_vector[CVTerm] & terms)  nogil except +
 
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        void replaceCVTerm(CVTerm & term)               nogil except +
 
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        void replaceCVTerms(libcpp_vector[CVTerm] cv_terms,
 
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                            String accession
 
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                           ) nogil except +
 
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        void replaceCVTerms(Map[String, libcpp_vector[CVTerm] ] cv_term_map
 
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                           ) nogil except +
 
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        Map[String, libcpp_vector[CVTerm] ] getCVTerms()
 
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        void addCVTerm(CVTerm & term)                   nogil except +
 
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        bool hasCVTerm(String accession)  nogil except +
 
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        bool empty()                      nogil except +