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<!-- Generated by Doxygen 1.8.5 -->
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></li> </ul>
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<div class="headertitle">
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<div class="title">RTSimulation Member List</div> </div>
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<div class="contents">
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<p>This is the complete list of members for <a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a>, including all inherited members.</p>
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<table class="directory">
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#ae771da7f17dc446c06274e2f068ba8df">calculateMT_</a>(FeatureMapSim &features, std::vector< DoubleReal > &predicted_retention_times)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a2a79764f03f61629914d871d908d7550">createExperiment</a>(MSSimExperiment &experiment)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a>(const String &name)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a>(const DefaultParamHandler &rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#aa23e9628bc5d51649d0f0f6692a51847">egh_tau_location_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#aff67422b2f91eb7c4b0c07310a21c62b">egh_tau_scale_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a87bc858f8d96b32af415e416942d98b1">egh_variance_location_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#ab05d1f4edb0b7f9c544dd83b61b77b2e">egh_variance_scale_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#ae388da65872d2621cff43e34bebd4924">getChargeContribution_</a>(Map< String, double > &q_cterm, Map< String, double > &q_nterm, Map< String, double > &q_aa_basic, Map< String, double > &q_aa_acidic)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#aa5bbec7cdd72c51a4afe57f37a47dca3">getGradientTime</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a630005e5d32afe42a191a84ed1307171">gradient_max_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a41136c7b340c11631ca29175229a4b18">gradient_min_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#afffd136fa6fd02f50c50c461e660b8f6">isRTColumnOn</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#af8d4e3deed965d52f90f788ce339c831">noRTColumn_</a>(FeatureMapSim &)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#abcc157a2a6906a52dd4ac330174f93f5">operator=</a>(const RTSimulation &source)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">OpenMS::DefaultParamHandler::operator=</a>(const DefaultParamHandler &rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a>(const DefaultParamHandler &rhs) const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a0f66312fff6e3881b6384ed786cfffce">predictContaminantsRT</a>(FeatureMapSim &)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a127b17b4ac01a548052f7c1fac05f11b">predictRT</a>(FeatureMapSim &features)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a1755a34bd4d88feb6a87a209273177eb">rnd_gen_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a2ca80ee9bf721feebb4f9db372633a08">rt_model_file_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a5070ae6e05eee20e2092127475da3951">rt_sampling_rate_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#afa1336d88c4835129380be4566582d81">RTSimulation</a>(const SimRandomNumberGenerator &random_generator)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a4a14b187e23f1d6f1198426924771d75">RTSimulation</a>(const RTSimulation &source)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a2318631d862ec8e34f7ffefa4706c503">RTSimulation</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a592956c92badca126cec3abd62da8d67">setDefaultParams_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(const String &name)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a>(const Param &param)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#af85a4b66f77e184b1f46ec180a8bced1">smoothRTDistortion_</a>(MSSimExperiment &experiment)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#aad41a72aba947f4f94385e180f304ea0">total_gradient_time_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#aaf258e1a9846d9b238ee4b3005ad3ee9">updateMembers_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">protected</span><span class="mlabel">virtual</span></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a826df0019cfb51d6cd7435448f3efff1">wrapSVM</a>(std::vector< AASequence > &peptide_sequences, std::vector< DoubleReal > &predicted_retention_times)</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html#a8721f72666b5a0fcc6274a5c2481f455">~RTSimulation</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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</table></div><!-- contents -->
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<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
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<TABLE width="100%" border="0">
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5</font></TD>
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doc/html/classOpenMS_1_1RTSimulation-members.html
