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  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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doc/html/classOpenMS_1_1IsobaricQuantitationMethod.html
 
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<TITLE>IsobaricQuantitationMethod Class Reference</TITLE>
 
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a></li>  </ul>
 
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<a href="#nested-classes">Classes</a> &#124;
 
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<a href="#pub-types">Public Types</a> &#124;
 
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<a href="#pub-methods">Public Member Functions</a> &#124;
 
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<a href="#pro-methods">Protected Member Functions</a> &#124;
 
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<a href="classOpenMS_1_1IsobaricQuantitationMethod-members.html">List of all members</a>  </div>
 
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<div class="title">IsobaricQuantitationMethod Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div>  </div>
 
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<p>Abstract base class describing an isobaric quantitation method in terms of the used channels and an isotope correction matrix.  
 
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 <a href="classOpenMS_1_1IsobaricQuantitationMethod.html#details">More...</a></p>
 
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<p><code>#include &lt;<a class="el" href="IsobaricQuantitationMethod_8h_source.html">OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h</a>&gt;</code></p>
 
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Inheritance diagram for IsobaricQuantitationMethod:</div>
 
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  <img src="classOpenMS_1_1IsobaricQuantitationMethod.png" usemap="#IsobaricQuantitationMethod_map" alt=""/>
 
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<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="207,0,404,24"/>
 
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<area href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html" title="iTRAQ 8 plex quantitation to be used with the IsobaricQuantitation. " alt="ItraqEightPlexQuantitationMethod" shape="rect" coords="0,112,197,136"/>
 
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<area href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html" title="iTRAQ 4 plex quantitation to be used with the IsobaricQuantitation. " alt="ItraqFourPlexQuantitationMethod" shape="rect" coords="207,112,404,136"/>
 
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<area href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html" title="TMT 6plex quantitation to be used with the IsobaricQuantitation. " alt="TMTSixPlexQuantitationMethod" shape="rect" coords="414,112,611,136"/>
 
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<table class="memberdecls">
 
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
 
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Classes</h2></td></tr>
 
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">IsobaricChannelInformation</a></td></tr>
 
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<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structOpenMS_1_1Summary.html" title="Summary of fitting results. ">Summary</a> of an isobaric quantitation channel.  <a href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html#details">More...</a><br/></td></tr>
 
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<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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</table><table class="memberdecls">
 
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
 
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Public Types</h2></td></tr>
 
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<tr class="memitem:aa7bb02779188678f665adfdcb4386bab"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
 
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&lt; <a class="el" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">IsobaricChannelInformation</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a></td></tr>
 
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<tr class="separator:aa7bb02779188678f665adfdcb4386bab"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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</table><table class="memberdecls">
 
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
 
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Public Member Functions</h2></td></tr>
 
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<tr class="memitem:a4df4e92b5177def1dfdc0a65eac40b80"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4df4e92b5177def1dfdc0a65eac40b80">IsobaricQuantitationMethod</a> ()</td></tr>
 
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<tr class="memdesc:a4df4e92b5177def1dfdc0a65eac40b80"><td class="mdescLeft">&#160;</td><td class="mdescRight">c'tor setting the name for the underlying param handler  <a href="#a4df4e92b5177def1dfdc0a65eac40b80">More...</a><br/></td></tr>
 
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<tr class="separator:a4df4e92b5177def1dfdc0a65eac40b80"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:abc81075b5cd50554104aa041d9f8af0a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#abc81075b5cd50554104aa041d9f8af0a">~IsobaricQuantitationMethod</a> ()</td></tr>
 
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<tr class="memdesc:abc81075b5cd50554104aa041d9f8af0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">d'tor  <a href="#abc81075b5cd50554104aa041d9f8af0a">More...</a><br/></td></tr>
 
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<tr class="separator:abc81075b5cd50554104aa041d9f8af0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a8c0368916329ab3be3d6cb3b8cf6d0a3"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a8c0368916329ab3be3d6cb3b8cf6d0a3">getName</a> () const =0</td></tr>
 
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<tr class="memdesc:a8c0368916329ab3be3d6cb3b8cf6d0a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns a unique name for the quantitation method.  <a href="#a8c0368916329ab3be3d6cb3b8cf6d0a3">More...</a><br/></td></tr>
 
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<tr class="separator:a8c0368916329ab3be3d6cb3b8cf6d0a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a4be01f758e4f0d040ca6219bb2e50203"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4be01f758e4f0d040ca6219bb2e50203">getChannelInformation</a> () const =0</td></tr>
 
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<tr class="memdesc:a4be01f758e4f0d040ca6219bb2e50203"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns information on the different channels used by the qunatitation method.  <a href="#a4be01f758e4f0d040ca6219bb2e50203">More...</a><br/></td></tr>
 
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<tr class="separator:a4be01f758e4f0d040ca6219bb2e50203"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a44286a57bf16754aca7cb71d8e9f3993"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a44286a57bf16754aca7cb71d8e9f3993">getNumberOfChannels</a> () const =0</td></tr>
 
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<tr class="memdesc:a44286a57bf16754aca7cb71d8e9f3993"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gives the number of channels available for this quantitation method.  <a href="#a44286a57bf16754aca7cb71d8e9f3993">More...</a><br/></td></tr>
 
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<tr class="separator:a44286a57bf16754aca7cb71d8e9f3993"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a7e53b19fbda82d25316ee853c72d23ff"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>&lt; <a class="el" href="classdouble.html">double</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a7e53b19fbda82d25316ee853c72d23ff">getIsotopeCorrectionMatrix</a> () const =0</td></tr>
 
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<tr class="memdesc:a7e53b19fbda82d25316ee853c72d23ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns an isotope correction matrix suitable for the given quantitation method.  <a href="#a7e53b19fbda82d25316ee853c72d23ff">More...</a><br/></td></tr>
 
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<tr class="separator:a7e53b19fbda82d25316ee853c72d23ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a87769e757ff86b2a7aa9b3ab3d20dbc3"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a87769e757ff86b2a7aa9b3ab3d20dbc3">getReferenceChannel</a> () const =0</td></tr>
 
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<tr class="memdesc:a87769e757ff86b2a7aa9b3ab3d20dbc3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the index of the reference channel in the IsobaricChannelList (see <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4be01f758e4f0d040ca6219bb2e50203" title="Returns information on the different channels used by the qunatitation method. ">IsobaricQuantitationMethod::getChannelInformation()</a>).  <a href="#a87769e757ff86b2a7aa9b3ab3d20dbc3">More...</a><br/></td></tr>
 
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<tr class="separator:a87769e757ff86b2a7aa9b3ab3d20dbc3"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
 
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<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
 
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<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor with name that is displayed in error messages.  <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
 
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<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
 
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<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
 
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<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
 
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<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
 
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<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
 
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<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator.  <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
 
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<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs) const </td></tr>
 
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<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
 
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<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;param)</td></tr>
 
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<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the parameters.  <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
 
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<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
 
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<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the parameters.  <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
 
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<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
 
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<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the default parameters.  <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
 
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<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
 
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<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the name.  <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
 
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<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
 
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<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable access to the name.  <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
 
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<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
 
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<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the registered subsections.  <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
 
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<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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</table><table class="memberdecls">
 
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
 
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Protected Member Functions</h2></td></tr>
 
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<tr class="memitem:ad7f1c9c450ddd4b4872561038f21020c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>&lt; <a class="el" href="classdouble.html">double</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#ad7f1c9c450ddd4b4872561038f21020c">stringListToIsotopCorrectionMatrix_</a> (const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;stringlist) const </td></tr>
 
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<tr class="memdesc:ad7f1c9c450ddd4b4872561038f21020c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Helper function to convert a string list containing an isotope correction matrix into a <a class="el" href="classOpenMS_1_1Matrix.html">Matrix&lt;double&gt;</a>.  <a href="#ad7f1c9c450ddd4b4872561038f21020c">More...</a><br/></td></tr>
 
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<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
 
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<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
 
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<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method.  <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
 
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<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
 
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<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor.  <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
 
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Additional Inherited Members</h2></td></tr>
 
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<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
 
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<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
 
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<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for current parameters.  <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
 
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<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
 
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<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes!  <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
 
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<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
 
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<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes!  <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
 
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<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
 
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<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name that is displayed in error messages during the parameter checking.  <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
 
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<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
 
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<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no checking if parameters in done;.  <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
 
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<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
 
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<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
 
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<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;.  <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
 
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 
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<div class="textblock"><p>Abstract base class describing an isobaric quantitation method in terms of the used channels and an isotope correction matrix. </p>
 
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</div><h2 class="groupheader">Member Typedef Documentation</h2>
 
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          <td class="memname">typedef std::vector&lt;<a class="el" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">IsobaricChannelInformation</a>&gt; <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a></td>
 
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<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
 
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          <td class="memname"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a> </td>
 
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          <td>(</td>
 
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          <td class="paramname"></td><td>)</td>
 
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<p>c'tor setting the name for the underlying param handler </p>
 
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          <td class="memname">virtual ~<a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a> </td>
 
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          <td>(</td>
 
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          <td class="paramname"></td><td>)</td>
 
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          <td></td>
 
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<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
 
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<p>d'tor </p>
 
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<h2 class="groupheader">Member Function Documentation</h2>
 
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          <td class="memname">virtual const <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a>&amp; getChannelInformation </td>
 
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          <td>(</td>
 
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          <td> const</td>
 
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<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
 
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</div><div class="memdoc">
 
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<p>Returns information on the different channels used by the qunatitation method. </p>
 
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<dl class="section return"><dt>Returns</dt><dd>A st::vector containing the channel information for this quantitation method. </dd></dl>
 
238
 
 
239
<p>Implemented in <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#a46a71312f95f8e11bd74f11da1396fb8">ItraqEightPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#a46a71312f95f8e11bd74f11da1396fb8">TMTSixPlexQuantitationMethod</a>, and <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a46a71312f95f8e11bd74f11da1396fb8">ItraqFourPlexQuantitationMethod</a>.</p>
 
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          <td class="memname">virtual <a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>&lt;<a class="el" href="classdouble.html">double</a>&gt; getIsotopeCorrectionMatrix </td>
 
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          <td>(</td>
 
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          <td> const</td>
 
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<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
 
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</div><div class="memdoc">
 
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<p>Returns an isotope correction matrix suitable for the given quantitation method. </p>
 
265
 
 
266
<p>Implemented in <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#a187979d7971b2ea264793f6eb65917db">ItraqEightPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#a187979d7971b2ea264793f6eb65917db">TMTSixPlexQuantitationMethod</a>, and <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a187979d7971b2ea264793f6eb65917db">ItraqFourPlexQuantitationMethod</a>.</p>
 
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          <td class="memname">virtual const <a class="el" href="classOpenMS_1_1String.html">String</a>&amp; getName </td>
 
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          <td> const</td>
 
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<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
 
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<p>Returns a unique name for the quantitation method. </p>
 
292
<dl class="section return"><dt>Returns</dt><dd>The unique name or identifier of the quantitation method. </dd></dl>
 
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<p>Implemented in <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#aaee0f2845288173de9f6ad47e6ad31d5">ItraqEightPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#aaee0f2845288173de9f6ad47e6ad31d5">TMTSixPlexQuantitationMethod</a>, and <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#aaee0f2845288173de9f6ad47e6ad31d5">ItraqFourPlexQuantitationMethod</a>.</p>
 
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          <td class="memname">virtual <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getNumberOfChannels </td>
 
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          <td> const</td>
 
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<p>Gives the number of channels available for this quantitation method. </p>
 
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<dl class="section return"><dt>Returns</dt><dd>The number of channels available for this quantitation method. </dd></dl>
 
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<p>Implemented in <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#afeac82c909439329c803a1987bf3e9ba">ItraqEightPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#afeac82c909439329c803a1987bf3e9ba">TMTSixPlexQuantitationMethod</a>, and <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#afeac82c909439329c803a1987bf3e9ba">ItraqFourPlexQuantitationMethod</a>.</p>
 
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          <td class="memname">virtual <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getReferenceChannel </td>
 
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<p>Returns the index of the reference channel in the IsobaricChannelList (see <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4be01f758e4f0d040ca6219bb2e50203" title="Returns information on the different channels used by the qunatitation method. ">IsobaricQuantitationMethod::getChannelInformation()</a>). </p>
 
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<p>Implemented in <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#a016bcec7c633bcd0007e927ac3d0fa4e">ItraqEightPlexQuantitationMethod</a>, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#a016bcec7c633bcd0007e927ac3d0fa4e">TMTSixPlexQuantitationMethod</a>, and <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a016bcec7c633bcd0007e927ac3d0fa4e">ItraqFourPlexQuantitationMethod</a>.</p>
 
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          <td class="memname"><a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>&lt;<a class="el" href="classdouble.html">double</a>&gt; stringListToIsotopCorrectionMatrix_ </td>
 
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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;&#160;</td>
 
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          <td class="paramname"><em>stringlist</em></td><td>)</td>
 
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<p>Helper function to convert a string list containing an isotope correction matrix into a <a class="el" href="classOpenMS_1_1Matrix.html">Matrix&lt;double&gt;</a>. </p>
 
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    <tr><td class="paramname">stringlist</td><td>The <a class="el" href="classOpenMS_1_1StringList.html" title="String list. ">StringList</a> to convert. </td></tr>
 
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<dl class="section return"><dt>Returns</dt><dd>An isotope correction matrix as <a class="el" href="classOpenMS_1_1Matrix.html">Matrix&lt;double&gt;</a>. </dd></dl>
 
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
 
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5</font></TD>
 
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