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  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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source/TEST/TOPP/FileMerger_9_output.traML
 
1
<?xml version="1.0" encoding="UTF-8"?>
 
2
<TraML version="1.0.0" xmlns="http://psi.hupo.org/ms/traml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/traml TraML1.0.0.xsd">
 
3
  <cvList>
 
4
    <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="2.31.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
 
5
    <cv id="UO" fullName="Unit Ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
 
6
    <cv id="UNIMOD" fullName="UNIMOD CV for modifications" version="unknown" URI="http://www.unimod.org/obo/unimod.obo"/>
 
7
    <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="unknown" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
 
8
    <cv id="UO" fullName="Unit Ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
 
9
  </cvList>
 
10
  <SourceFileList>
 
11
    <SourceFile id="sf1" name="OneTransition.tsv" location="file:///F:/data/Exp01">
 
12
      <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="71be39fb2700ab2f3c8b2234b91274968b6899b1"/>
 
13
      <cvParam cvRef="MS" accession="MS:1000914" name="tab delimited text file"/>
 
14
    </SourceFile>
 
15
  </SourceFileList>
 
16
  <ContactList>
 
17
    <Contact id="CS">
 
18
      <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value="Eric Deutsch"/>
 
19
      <cvParam cvRef="MS" accession="MS:1000587" name="contact address" value="1441 NE 34th St, Seattle WA 98103, USA"/>
 
20
      <cvParam cvRef="MS" accession="MS:1000588" name="contact URL" value="http://www.systemsbiology.org/"/>
 
21
      <cvParam cvRef="MS" accession="MS:1000589" name="contact email" value="example@systemsbiology.org"/>
 
22
      <cvParam cvRef="MS" accession="MS:1000590" name="contact organization" value="Institute for Systems Biology"/>
 
23
    </Contact>
 
24
  </ContactList>
 
25
  <PublicationList>
 
26
    <Publication id="PMID12748199">
 
27
      <cvParam cvRef="MS" accession="MS:1000879" name="PubMed identifier" value="12748199"/>
 
28
    </Publication>
 
29
  </PublicationList>
 
30
  <InstrumentList>
 
31
    <Instrument id="LCQ_Deca">
 
32
      <cvParam cvRef="MS" accession="MS:1000554" name="LCQ Deca"/>
 
33
    </Instrument>
 
34
    <Instrument id="QTRAP">
 
35
      <cvParam cvRef="MS" accession="MS:1000870" name="4000 QTRAP"/>
 
36
    </Instrument>
 
37
  </InstrumentList>
 
38
  <SoftwareList>
 
39
    <Software id="MaRiMba" version="1.0">
 
40
      <cvParam cvRef="MS" accession="MS:1000872" name="MaRiMba"/>
 
41
    </Software>
 
42
    <Software id="SSRCalc3.0" version="3.0">
 
43
      <cvParam cvRef="MS" accession="MS:1000874" name="SSRCalc"/>
 
44
    </Software>
 
45
    <Software id="Skyline0.5" version="0.5">
 
46
      <cvParam cvRef="MS" accession="MS:1000922" name="Skyline"/>
 
47
    </Software>
 
48
    <Software id="FileMerger" version="1.11.1">
 
49
    </Software>
 
50
  </SoftwareList>
 
51
  <ProteinList>
 
52
    <Protein id="Q12149">
 
53
      <cvParam cvRef="MS" accession="MS:1000883" name="protein short name" value="HSF 1"/>
 
54
      <cvParam cvRef="MS" accession="MS:1000885" name="protein accession" value="Q00613"/>
 
55
      <cvParam cvRef="MS" accession="MS:1000886" name="protein name" value="Heat shock factor protein 1"/>
 
56
      <Sequence>MSTEMETKAEDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDNGKE</Sequence>
 
57
    </Protein>
 
58
    <Protein id="ENSP00000332698">
 
59
      <cvParam cvRef="MS" accession="MS:1000883" name="protein short name" value="HSF 1"/>
 
60
      <cvParam cvRef="MS" accession="MS:1000885" name="protein accession" value="ENSP00000332698"/>
 
61
      <cvParam cvRef="MS" accession="MS:1000886" name="protein name" value="Heat shock factor protein 1"/>
 
62
      <Sequence>MSTEMETKAEDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDNGKEELISNSSDALDKI</Sequence>
 
63
    </Protein>
 
64
    <Protein id="PROTEIN">
 
65
      <Sequence>PEPTIDEAPEPTIDEB</Sequence>
 
66
    </Protein>
 
67
  </ProteinList>
 
68
  <CompoundList>
 
69
    <Peptide id="ADTHFLLNIYDQLR-M1" sequence="ADTHFLLNIYDQLR">
 
70
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="G1"/>
 
71
      <cvParam cvRef="MS" accession="MS:1000863" name="predicted isoelectric point" value="5.22"/>
 
72
      <cvParam cvRef="MS" accession="MS:1000891" name="heavy labeled peptide"/>
 
73
      <cvParam cvRef="MS" accession="MS:1001117" name="theoretical mass" value="1189.22" unitCvRef="UO" unitAccession="UO:0000221" unitName="dalton"/>
 
74
      <userParam name="isomerization potential" type="xsd:double" value="0.583"/>
 
75
      <ProteinRef ref="Q12149"/>
 
76
      <ProteinRef ref="ENSP00000332698"/>
 
77
      <Modification location="0" monoisotopicMassDelta="127.063324">
 
78
        <cvParam cvRef="UNIMOD" accession="UNIMOD:29" name="SMA"/>
 
79
      </Modification>
 
80
      <Modification location="1" monoisotopicMassDelta="15.994919">
 
81
        <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
 
82
      </Modification>
 
83
      <RetentionTimeList>
 
84
        <RetentionTime softwareRef="SSRCalc3.0">
 
85
          <cvParam cvRef="MS" accession="MS:1000897" name="predicted retention time" value="44.07" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
86
        </RetentionTime>
 
87
        <RetentionTime>
 
88
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="38.43" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
89
          <cvParam cvRef="MS" accession="MS:1000902" name="H-PINS retention time normalization standard"/>
 
90
        </RetentionTime>
 
91
      </RetentionTimeList>
 
92
      <Evidence>
 
93
        <cvParam cvRef="MS" accession="MS:1001100" name="confident peptide" value="6"/>
 
94
      </Evidence>
 
95
    </Peptide>
 
96
    <Peptide id="PEPTIDEC" sequence="PEPTIDEC">
 
97
    </Peptide>
 
98
    <Peptide id="PEPTIDEM" sequence="PEPTIDEM">
 
99
    </Peptide>
 
100
    <Peptide id="tr_gr1" sequence="PEPTIDEA">
 
101
      <ProteinRef ref="PROTEIN"/>
 
102
      <RetentionTimeList>
 
103
        <RetentionTime>
 
104
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="0.44"/>
 
105
        </RetentionTime>
 
106
      </RetentionTimeList>
 
107
    </Peptide>
 
108
    <Peptide id="tr_gr2" sequence="PEPTIDEB">
 
109
      <ProteinRef ref=""/>
 
110
      <RetentionTimeList>
 
111
        <RetentionTime>
 
112
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="0.2"/>
 
113
        </RetentionTime>
 
114
      </RetentionTimeList>
 
115
    </Peptide>
 
116
    <Compound id="glyoxylate">
 
117
      <cvParam cvRef="MS" accession="MS:1000866" name="molecular formula" value="C2HO3"/>
 
118
      <cvParam cvRef="MS" accession="MS:1000868" name="SMILES string" value="[CH](=[O])[C](=[O])[O-]"/>
 
119
      <cvParam cvRef="MS" accession="MS:1001117" name="theoretical mass" value="423.39" unitCvRef="UO" unitAccession="UO:0000221" unitName="dalton"/>
 
120
      <RetentionTimeList>
 
121
        <RetentionTime>
 
122
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="22.34" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
123
          <cvParam cvRef="MS" accession="MS:1000902" name="H-PINS retention time normalization standard"/>
 
124
        </RetentionTime>
 
125
      </RetentionTimeList>
 
126
    </Compound>
 
127
  </CompoundList>
 
128
  <TransitionList>
 
129
    <Transition id="ADTHFLLNIYDQLR-M1-T1" peptideRef="ADTHFLLNIYDQLR-M1">
 
130
      <Precursor>
 
131
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="862.9467" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
132
        <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
133
      </Precursor>
 
134
      <Product>
 
135
        <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="1"/>
 
136
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="1040.57" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
137
        <InterpretationList>
 
138
          <Interpretation>
 
139
            <cvParam cvRef="MS" accession="MS:1000903" name="product ion series ordinal" value="8"/>
 
140
            <cvParam cvRef="MS" accession="MS:1000904" name="product ion m/z delta" value="0.03" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
141
            <cvParam cvRef="MS" accession="MS:1000926" name="product interpretation rank" value="1"/>
 
142
            <cvParam cvRef="MS" accession="MS:1001220" name="frag: y ion"/>
 
143
          </Interpretation>
 
144
          <Interpretation>
 
145
            <cvParam cvRef="MS" accession="MS:1000903" name="product ion series ordinal" value="9"/>
 
146
            <cvParam cvRef="MS" accession="MS:1000904" name="product ion m/z delta" value="-0.43" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
147
            <cvParam cvRef="MS" accession="MS:1000926" name="product interpretation rank" value="2"/>
 
148
            <cvParam cvRef="MS" accession="MS:1001222" name="frag: b ion - H2O"/>
 
149
          </Interpretation>
 
150
        </InterpretationList>
 
151
        <ConfigurationList>
 
152
          <Configuration instrumentRef="QTRAP" contactRef="CS">
 
153
            <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="26" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
 
154
            <cvParam cvRef="MS" accession="MS:1000419" name="collision gas" value="argon"/>
 
155
            <cvParam cvRef="MS" accession="MS:1000502" name="dwell time" value="0.12" unitCvRef="UO" unitAccession="UO:0000010" unitName="second"/>
 
156
            <cvParam cvRef="MS" accession="MS:1000869" name="collision gas pressure" value="12" unitCvRef="UO" unitAccession="UO:0000110" unitName="pascal"/>
 
157
            <cvParam cvRef="MS" accession="MS:1000875" name="declustering potential" value="64" unitCvRef="UO" unitAccession="UO:0000218" unitName="volt"/>
 
158
            <cvParam cvRef="MS" accession="MS:1000876" name="cone voltage" value="1200" unitCvRef="UO" unitAccession="UO:0000218" unitName="volt"/>
 
159
            <cvParam cvRef="MS" accession="MS:1000877" name="tube lens voltage" value="23" unitCvRef="UO" unitAccession="UO:0000218" unitName="volt"/>
 
160
            <cvParam cvRef="MS" accession="MS:1000880" name="interchannel delay" value="0.01" unitCvRef="UO" unitAccession="UO:0000010" unitName="second"/>
 
161
            <ValidationStatus>
 
162
              <cvParam cvRef="MS" accession="MS:1000042" name="peak intensity" value="4072" unitCvRef="MS" unitAccession="MS:1000905" unitName="percent of base peak times 100"/>
 
163
              <cvParam cvRef="MS" accession="MS:1000139" name="4000 QTRAP"/>
 
164
              <cvParam cvRef="MS" accession="MS:1000906" name="peak intensity rank" value="2"/>
 
165
              <cvParam cvRef="MS" accession="MS:1000907" name="peak targeting suitability rank" value="1"/>
 
166
              <cvParam cvRef="MS" accession="MS:1000910" name="transition optimized on specified instrument"/>
 
167
            </ValidationStatus>
 
168
          </Configuration>
 
169
        </ConfigurationList>
 
170
      </Product>
 
171
      <RetentionTime softwareRef="Skyline0.5">
 
172
        <cvParam cvRef="MS" accession="MS:1000895" name="local retention time" value="40.02" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
173
        <cvParam cvRef="MS" accession="MS:1000916" name="retention time window lower offset" value="3.0" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
174
        <cvParam cvRef="MS" accession="MS:1000917" name="retention time window upper offset" value="3.0" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
175
      </RetentionTime>
 
176
      <Prediction softwareRef="MaRiMba" contactRef="CS">
 
177
        <cvParam cvRef="MS" accession="MS:1000042" name="peak intensity" value="10000" unitCvRef="MS" unitAccession="MS:1000905" unitName="percent of base peak times 100"/>
 
178
        <cvParam cvRef="MS" accession="MS:1000291" name="linear ion trap"/>
 
179
        <cvParam cvRef="MS" accession="MS:1000906" name="peak intensity rank" value="1"/>
 
180
        <cvParam cvRef="MS" accession="MS:1000907" name="peak targeting suitability rank" value="1"/>
 
181
        <cvParam cvRef="MS" accession="MS:1000912" name="transition purported from an MS/MS spectrum on a different, specified instrument"/>
 
182
      </Prediction>
 
183
    </Transition>
 
184
    <Transition id="ADTHFLLNIYDQLR-M1-T2" peptideRef="ADTHFLLNIYDQLR-M1">
 
185
      <Precursor>
 
186
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="862.9467" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
187
        <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
188
        <cvParam cvRef="MS" accession="MS:1000828" name="isolation window lower offset" value="1.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
189
        <cvParam cvRef="MS" accession="MS:1000829" name="isolation window upper offset" value="1.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
190
      </Precursor>
 
191
      <IntermediateProduct>
 
192
        <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="1"/>
 
193
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="1040.57" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
194
        <InterpretationList>
 
195
          <Interpretation>
 
196
            <cvParam cvRef="MS" accession="MS:1000903" name="product ion series ordinal" value="8"/>
 
197
            <cvParam cvRef="MS" accession="MS:1000904" name="product ion m/z delta" value="0.03" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
198
            <cvParam cvRef="MS" accession="MS:1000926" name="product interpretation rank" value="1"/>
 
199
            <cvParam cvRef="MS" accession="MS:1001220" name="frag: y ion"/>
 
200
          </Interpretation>
 
201
        </InterpretationList>
 
202
        <ConfigurationList>
 
203
          <Configuration instrumentRef="QTRAP" contactRef="CS">
 
204
            <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="26" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
 
205
          </Configuration>
 
206
        </ConfigurationList>
 
207
      </IntermediateProduct>
 
208
      <Product>
 
209
        <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="1"/>
 
210
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="543.2" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
211
        <InterpretationList>
 
212
          <Interpretation>
 
213
            <cvParam cvRef="MS" accession="MS:1000903" name="product ion series ordinal" value="4"/>
 
214
            <cvParam cvRef="MS" accession="MS:1000904" name="product ion m/z delta" value="0.03" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
215
            <cvParam cvRef="MS" accession="MS:1000926" name="product interpretation rank" value="1"/>
 
216
            <cvParam cvRef="MS" accession="MS:1001220" name="frag: y ion"/>
 
217
          </Interpretation>
 
218
        </InterpretationList>
 
219
        <ConfigurationList>
 
220
          <Configuration instrumentRef="QTRAP" contactRef="CS">
 
221
            <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="20.4" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
 
222
            <cvParam cvRef="MS" accession="MS:1000502" name="dwell time" value="0.12" unitCvRef="UO" unitAccession="UO:0000010" unitName="second"/>
 
223
          </Configuration>
 
224
        </ConfigurationList>
 
225
      </Product>
 
226
      <RetentionTime softwareRef="Skyline0.5">
 
227
        <cvParam cvRef="MS" accession="MS:1000895" name="local retention time" value="40.02" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
228
        <cvParam cvRef="MS" accession="MS:1000916" name="retention time window lower offset" value="3.0" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
229
        <cvParam cvRef="MS" accession="MS:1000917" name="retention time window upper offset" value="3.0" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
230
      </RetentionTime>
 
231
    </Transition>
 
232
    <Transition id="tr1" peptideRef="tr_gr1">
 
233
      <Precursor>
 
234
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="500" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
235
      </Precursor>
 
236
      <Product>
 
237
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="628.435" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
238
      </Product>
 
239
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="1"/>
 
240
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
241
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="1"/>
 
242
    </Transition>
 
243
    <Transition id="tr2" peptideRef="tr_gr1">
 
244
      <Precursor>
 
245
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="500" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
246
      </Precursor>
 
247
      <Product>
 
248
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="654.38" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
249
      </Product>
 
250
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="1"/>
 
251
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
252
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="2"/>
 
253
    </Transition>
 
254
    <Transition id="tr3" peptideRef="tr_gr2">
 
255
      <Precursor>
 
256
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="501" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
257
      </Precursor>
 
258
      <Product>
 
259
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="618.31" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
260
      </Product>
 
261
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="1"/>
 
262
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
263
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="10000"/>
 
264
    </Transition>
 
265
    <Transition id="tr4" peptideRef="tr_gr2">
 
266
      <Precursor>
 
267
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="501" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
268
      </Precursor>
 
269
      <Product>
 
270
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="628.435" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
271
      </Product>
 
272
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="1"/>
 
273
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
274
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="2000"/>
 
275
    </Transition>
 
276
    <Transition id="tr5" peptideRef="tr_gr2">
 
277
      <Precursor>
 
278
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="501" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
279
      </Precursor>
 
280
      <Product>
 
281
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="651.3" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
282
      </Product>
 
283
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="1"/>
 
284
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
285
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="4300"/>
 
286
    </Transition>
 
287
  </TransitionList>
 
288
  <TargetList>
 
289
    <cvParam cvRef="MS" accession="MS:1000920" name="includes supersede excludes"/>
 
290
    <TargetIncludeList>
 
291
      <Target id="PEPTIDEC2+" peptideRef="PEPTIDEC">
 
292
        <Precursor>
 
293
          <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
294
          <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="862.9467" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
295
        </Precursor>
 
296
        <RetentionTime softwareRef="Skyline0.5">
 
297
          <cvParam cvRef="MS" accession="MS:1000895" name="local retention time" value="27.44" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
298
          <cvParam cvRef="MS" accession="MS:1000916" name="retention time window lower offset" value="4.0" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
299
          <cvParam cvRef="MS" accession="MS:1000917" name="retention time window upper offset" value="4.0" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
 
300
        </RetentionTime>
 
301
        <ConfigurationList>
 
302
          <Configuration instrumentRef="LCQ_Deca" contactRef="CS">
 
303
            <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="26" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
 
304
          </Configuration>
 
305
        </ConfigurationList>
 
306
      </Target>
 
307
    </TargetIncludeList>
 
308
    <TargetExcludeList>
 
309
      <Target id="PEPTIDEM3+" peptideRef="PEPTIDEM">
 
310
        <Precursor>
 
311
          <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="3"/>
 
312
          <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="698.3443" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
313
        </Precursor>
 
314
      </Target>
 
315
    </TargetExcludeList>
 
316
  </TargetList>
 
317
</TraML>