← Back to branch summary

~ubuntu-branches/ubuntu/wily/openms/wily

« back to all changes in this revision

Viewing changes to source/TEST/TOPP/OpenSwathDecoyGenerator_input_3.TraML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

Show diffs side-by-side

added added

removed removed

Lines of Context:
source/TEST/TOPP/OpenSwathDecoyGenerator_input_3.TraML
 
1
<?xml version="1.0" encoding="UTF-8"?>
 
2
<TraML version="1.0.0" xmlns="http://psi.hupo.org/ms/traml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/traml TraML1.0.0.xsd">
 
3
  <cvList>
 
4
    <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="unknown" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
 
5
    <cv id="UO" fullName="Unit Ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
 
6
  </cvList>
 
7
  <ProteinList>
 
8
    <Protein id="AQRT" >
 
9
      <Sequence></Sequence>
 
10
    </Protein>
 
11
  </ProteinList>
 
12
  <CompoundList>
 
13
    <Peptide id="78" sequence="QVFIGCPASVADQDAFERR">
 
14
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="3"/>
 
15
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
16
      <userParam name="full_peptide_name" type="xsd:string" value="(UniMod:5)QVFIGC(UniMod:4)PASVADQDAFERR(UniMod:11)"/>
 
17
      <ProteinRef ref="ProteinC"/>
 
18
      <Modification location="0" monoisotopicMassDelta="43.005814" averageMassDelta="43.0247">
 
19
        <cvParam cvRef="UNIMOD" accession="UNIMOD:5" name="Carbamyl"/>
 
20
      </Modification>
 
21
      <Modification location="20" monoisotopicMassDelta="-48.003371" averageMassDelta="-48.1075">
 
22
        <cvParam cvRef="UNIMOD" accession="UNIMOD:11" name="Met->Hsl"/>
 
23
      </Modification>
 
24
      <Modification location="6" monoisotopicMassDelta="57.021464" averageMassDelta="57.0513">
 
25
        <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
 
26
      </Modification>
 
27
      <RetentionTimeList>
 
28
        <RetentionTime>
 
29
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="52.2"/>
 
30
        </RetentionTime>
 
31
      </RetentionTimeList>
 
32
    </Peptide>
 
33
    <Peptide id="ADVTPADFSEWSK" sequence="ADVTPADFSEWSK">
 
34
      <cvParam cvRef="" accession="" name="full_peptide_name" value="ADVTPADFSEWSK"/>
 
35
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
36
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
37
      <ProteinRef ref="AQRT"/>
 
38
      <RetentionTimeList>
 
39
       <RetentionTime>
 
40
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="54.97"/>
 
41
       </RetentionTime>
 
42
      </RetentionTimeList>
 
43
    </Peptide>
 
44
    <Peptide id="DGLDAASYYAPVR" sequence="DGLDAASYYAPVR">
 
45
      <cvParam cvRef="" accession="" name="full_peptide_name" value="DGLDAASYYAPVR"/>
 
46
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
47
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
48
      <ProteinRef ref="AQRT"/>
 
49
      <RetentionTimeList>
 
50
       <RetentionTime>
 
51
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="43.28"/>
 
52
       </RetentionTime>
 
53
      </RetentionTimeList>
 
54
    </Peptide>
 
55
    <Peptide id="GAGSSEPVTGLDAK" sequence="GAGSSEPVTGLDAK">
 
56
      <cvParam cvRef="" accession="" name="full_peptide_name" value="GAGSSEPVTGLDAK"/>
 
57
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
58
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
59
      <ProteinRef ref="AQRT"/>
 
60
      <RetentionTimeList>
 
61
       <RetentionTime>
 
62
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="0.23"/>
 
63
       </RetentionTime>
 
64
      </RetentionTimeList>
 
65
    </Peptide>
 
66
    <Peptide id="GTFIIDPAAVIR" sequence="GTFIIDPAAVIR">
 
67
      <cvParam cvRef="" accession="" name="full_peptide_name" value="GTFIIDPAAVIR"/>
 
68
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
69
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
70
      <ProteinRef ref="AQRT"/>
 
71
      <RetentionTimeList>
 
72
       <RetentionTime>
 
73
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="86.72"/>
 
74
       </RetentionTime>
 
75
      </RetentionTimeList>
 
76
    </Peptide>
 
77
    <Peptide id="GTFIIDPGGVIR" sequence="GTFIIDPGGVIR">
 
78
      <cvParam cvRef="" accession="" name="full_peptide_name" value="GTFIIDPGGVIR"/>
 
79
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
80
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
81
      <ProteinRef ref="AQRT"/>
 
82
      <RetentionTimeList>
 
83
       <RetentionTime>
 
84
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="71.38"/>
 
85
       </RetentionTime>
 
86
      </RetentionTimeList>
 
87
    </Peptide>
 
88
    <Peptide id="LFLQFGAQGSPFLK" sequence="LFLQFGAQGSPFLK">
 
89
      <cvParam cvRef="" accession="" name="full_peptide_name" value="LFLQFGAQGSPFLK"/>
 
90
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
91
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
92
      <ProteinRef ref="AQRT"/>
 
93
      <RetentionTimeList>
 
94
       <RetentionTime>
 
95
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="98.09"/>
 
96
       </RetentionTime>
 
97
      </RetentionTimeList>
 
98
    </Peptide>
 
99
    <Peptide id="LGGNEQVTR" sequence="LGGNEQVTR">
 
100
      <cvParam cvRef="" accession="" name="full_peptide_name" value="LGGNEQVTR"/>
 
101
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
102
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
103
      <ProteinRef ref="AQRT"/>
 
104
      <RetentionTimeList>
 
105
       <RetentionTime>
 
106
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="-28.31"/>
 
107
       </RetentionTime>
 
108
      </RetentionTimeList>
 
109
    </Peptide>
 
110
    <Peptide id="TPVISGGPYEYR" sequence="TPVISGGPYEYR">
 
111
      <cvParam cvRef="" accession="" name="full_peptide_name" value="TPVISGGPYEYR"/>
 
112
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
113
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
114
      <ProteinRef ref="AQRT"/>
 
115
      <RetentionTimeList>
 
116
       <RetentionTime>
 
117
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="29"/>
 
118
       </RetentionTime>
 
119
      </RetentionTimeList>
 
120
    </Peptide>
 
121
    <Peptide id="TPVITGAPYEYR" sequence="TPVITGAPYEYR">
 
122
      <cvParam cvRef="" accession="" name="full_peptide_name" value="TPVITGAPYEYR"/>
 
123
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
124
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
125
      <ProteinRef ref="AQRT"/>
 
126
      <RetentionTimeList>
 
127
       <RetentionTime>
 
128
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="33.63"/>
 
129
       </RetentionTime>
 
130
      </RetentionTimeList>
 
131
    </Peptide>
 
132
    <Peptide id="VEATFGVDESNAK" sequence="VEATFGVDESNAK">
 
133
      <cvParam cvRef="" accession="" name="full_peptide_name" value="VEATFGVDESNAK"/>
 
134
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
135
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
136
      <ProteinRef ref="AQRT"/>
 
137
      <RetentionTimeList>
 
138
       <RetentionTime>
 
139
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="13.11"/>
 
140
       </RetentionTime>
 
141
      </RetentionTimeList>
 
142
    </Peptide>
 
143
    <Peptide id="YILAGVENSK" sequence="YILAGVENSK">
 
144
      <cvParam cvRef="" accession="" name="full_peptide_name" value="YILAGVENSK"/>
 
145
      <cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="2"/>
 
146
      <cvParam cvRef="MS" accession="MS:1000893" name="peptide group label" value="light"/>
 
147
      <ProteinRef ref="AQRT"/>
 
148
      <RetentionTimeList>
 
149
       <RetentionTime>
 
150
          <cvParam cvRef="MS" accession="MS:1000896" name="normalized retention time" value="22.38"/>
 
151
       </RetentionTime>
 
152
      </RetentionTimeList>
 
153
    </Peptide>
 
154
  </CompoundList>
 
155
  <TransitionList>
 
156
    <Transition id="AQRT.ADVTPADFSEWSK.2_y9_1.light" peptideRef="ADVTPADFSEWSK" >
 
157
      <cvParam cvRef="" accession="" name="annotation" value="ADVTPADFSEWSK0"/>
 
158
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="37.48"/>
 
159
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
160
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
161
      <Precursor>
 
162
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="726.835" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
163
      </Precursor>
 
164
      <Product>
 
165
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="1066.48" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
166
      </Product>
 
167
    </Transition>
 
168
    <Transition id="AQRT.ADVTPADFSEWSK.2_y9_2.light" peptideRef="ADVTPADFSEWSK" >
 
169
      <cvParam cvRef="" accession="" name="annotation" value="ADVTPADFSEWSK0"/>
 
170
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="37.48"/>
 
171
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="64.8"/>
 
172
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
173
      <Precursor>
 
174
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="726.835" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
175
      </Precursor>
 
176
      <Product>
 
177
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="533.746" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
178
      </Product>
 
179
    </Transition>
 
180
    <Transition id="AQRT.DGLDAASYYAPVR.2_y7_1.light" peptideRef="DGLDAASYYAPVR" >
 
181
      <cvParam cvRef="" accession="" name="annotation" value="DGLDAASYYAPVR0"/>
 
182
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="36.27"/>
 
183
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
184
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
185
      <Precursor>
 
186
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="699.338" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
187
      </Precursor>
 
188
      <Product>
 
189
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="855.436" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
190
      </Product>
 
191
    </Transition>
 
192
    <Transition id="AQRT.DGLDAASYYAPVR.2_y8_1.light" peptideRef="DGLDAASYYAPVR" >
 
193
      <cvParam cvRef="" accession="" name="annotation" value="DGLDAASYYAPVR0"/>
 
194
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="36.27"/>
 
195
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="67.9"/>
 
196
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
197
      <Precursor>
 
198
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="699.338" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
199
      </Precursor>
 
200
      <Product>
 
201
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="926.474" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
202
      </Product>
 
203
    </Transition>
 
204
    <Transition id="AQRT.GAGSSEPVTGLDAK.2_y8_1.light" peptideRef="GAGSSEPVTGLDAK" >
 
205
      <cvParam cvRef="" accession="" name="annotation" value="GAGSSEPVTGLDAK0"/>
 
206
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="33.87"/>
 
207
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
208
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
209
      <Precursor>
 
210
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="644.822" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
211
      </Precursor>
 
212
      <Product>
 
213
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="800.452" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
214
      </Product>
 
215
    </Transition>
 
216
    <Transition id="AQRT.GAGSSEPVTGLDAK.2_y6_1.light" peptideRef="GAGSSEPVTGLDAK" >
 
217
      <cvParam cvRef="" accession="" name="annotation" value="GAGSSEPVTGLDAK0"/>
 
218
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="33.87"/>
 
219
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="17"/>
 
220
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
221
      <Precursor>
 
222
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="644.822" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
223
      </Precursor>
 
224
      <Product>
 
225
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="604.331" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
226
      </Product>
 
227
    </Transition>
 
228
    <Transition id="AQRT.GTFIIDPAAVIR.2_y6_1.light" peptideRef="GTFIIDPAAVIR" >
 
229
      <cvParam cvRef="" accession="" name="annotation" value="GTFIIDPAAVIR0"/>
 
230
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="33.52"/>
 
231
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
232
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
233
      <Precursor>
 
234
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="636.869" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
235
      </Precursor>
 
236
      <Product>
 
237
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="626.399" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
238
      </Product>
 
239
    </Transition>
 
240
    <Transition id="AQRT.GTFIIDPAAVIR.2_y8_1.light" peptideRef="GTFIIDPAAVIR" >
 
241
      <cvParam cvRef="" accession="" name="annotation" value="GTFIIDPAAVIR0"/>
 
242
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="33.52"/>
 
243
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="65.6"/>
 
244
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
245
      <Precursor>
 
246
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="636.869" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
247
      </Precursor>
 
248
      <Product>
 
249
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="854.51" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
250
      </Product>
 
251
    </Transition>
 
252
    <Transition id="AQRT.GTFIIDPGGVIR.2_y6_1.light" peptideRef="GTFIIDPGGVIR" >
 
253
      <cvParam cvRef="" accession="" name="annotation" value="GTFIIDPGGVIR0"/>
 
254
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="32.91"/>
 
255
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
256
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
257
      <Precursor>
 
258
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="622.853" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
259
      </Precursor>
 
260
      <Product>
 
261
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="598.368" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
262
      </Product>
 
263
    </Transition>
 
264
    <Transition id="AQRT.GTFIIDPGGVIR.2_y7_1.light" peptideRef="GTFIIDPGGVIR" >
 
265
      <cvParam cvRef="" accession="" name="annotation" value="GTFIIDPGGVIR0"/>
 
266
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="32.91"/>
 
267
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="29.6"/>
 
268
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
269
      <Precursor>
 
270
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="622.853" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
271
      </Precursor>
 
272
      <Product>
 
273
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="713.395" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
274
      </Product>
 
275
    </Transition>
 
276
    <Transition id="AQRT.LFLQFGAQGSPFLK.2_y9_1.light" peptideRef="LFLQFGAQGSPFLK" >
 
277
      <cvParam cvRef="" accession="" name="annotation" value="LFLQFGAQGSPFLK0"/>
 
278
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="39.68"/>
 
279
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
280
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
281
      <Precursor>
 
282
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="776.929" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
283
      </Precursor>
 
284
      <Product>
 
285
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="904.489" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
286
      </Product>
 
287
    </Transition>
 
288
    <Transition id="AQRT.LFLQFGAQGSPFLK.2_y10_1.light" peptideRef="LFLQFGAQGSPFLK" >
 
289
      <cvParam cvRef="" accession="" name="annotation" value="LFLQFGAQGSPFLK0"/>
 
290
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="39.68"/>
 
291
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="90.6"/>
 
292
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
293
      <Precursor>
 
294
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="776.929" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
295
      </Precursor>
 
296
      <Product>
 
297
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="1051.56" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
298
      </Product>
 
299
    </Transition>
 
300
    <Transition id="AQRT.LGGNEQVTR.2_y8_1.light" peptideRef="LGGNEQVTR" >
 
301
      <cvParam cvRef="" accession="" name="annotation" value="LGGNEQVTR0"/>
 
302
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="26.94"/>
 
303
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
304
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
305
      <Precursor>
 
306
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="487.257" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
307
      </Precursor>
 
308
      <Product>
 
309
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="860.423" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
310
      </Product>
 
311
    </Transition>
 
312
    <Transition id="AQRT.LGGNEQVTR.2_y4_1.light" peptideRef="LGGNEQVTR" >
 
313
      <cvParam cvRef="" accession="" name="annotation" value="LGGNEQVTR0"/>
 
314
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="26.94"/>
 
315
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="53.1"/>
 
316
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
317
      <Precursor>
 
318
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="487.257" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
319
      </Precursor>
 
320
      <Product>
 
321
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="503.294" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
322
      </Product>
 
323
    </Transition>
 
324
    <Transition id="AQRT.TPVISGGPYEYR.2_y8_1.light" peptideRef="TPVISGGPYEYR" >
 
325
      <cvParam cvRef="" accession="" name="annotation" value="TPVISGGPYEYR0"/>
 
326
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="34.97"/>
 
327
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
328
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
329
      <Precursor>
 
330
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="669.838" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
331
      </Precursor>
 
332
      <Product>
 
333
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="928.416" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
334
      </Product>
 
335
    </Transition>
 
336
    <Transition id="AQRT.TPVISGGPYEYR.2_y9_1.light" peptideRef="TPVISGGPYEYR" >
 
337
      <cvParam cvRef="" accession="" name="annotation" value="TPVISGGPYEYR0"/>
 
338
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="34.97"/>
 
339
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="48.3"/>
 
340
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
341
      <Precursor>
 
342
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="669.838" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
343
      </Precursor>
 
344
      <Product>
 
345
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="1041.5" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
346
      </Product>
 
347
    </Transition>
 
348
    <Transition id="AQRT.TPVITGAPYEYR.2_y8_1.light" peptideRef="TPVITGAPYEYR" >
 
349
      <cvParam cvRef="" accession="" name="annotation" value="TPVITGAPYEYR0"/>
 
350
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.59"/>
 
351
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
352
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
353
      <Precursor>
 
354
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="683.853" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
355
      </Precursor>
 
356
      <Product>
 
357
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="956.448" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
358
      </Product>
 
359
    </Transition>
 
360
    <Transition id="AQRT.TPVITGAPYEYR.2_y7_1.light" peptideRef="TPVITGAPYEYR" >
 
361
      <cvParam cvRef="" accession="" name="annotation" value="TPVITGAPYEYR0"/>
 
362
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.59"/>
 
363
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="59.2"/>
 
364
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
365
      <Precursor>
 
366
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="683.853" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
367
      </Precursor>
 
368
      <Product>
 
369
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="855.4" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
370
      </Product>
 
371
    </Transition>
 
372
    <Transition id="AQRT.VEATFGVDESNAK.2_b8_1.light" peptideRef="VEATFGVDESNAK" >
 
373
      <cvParam cvRef="" accession="" name="annotation" value="VEATFGVDESNAK0"/>
 
374
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.59"/>
 
375
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
376
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
377
      <Precursor>
 
378
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="683.827" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
379
      </Precursor>
 
380
      <Product>
 
381
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="819.389" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
382
      </Product>
 
383
    </Transition>
 
384
    <Transition id="AQRT.VEATFGVDESNAK.2_y9_1.light" peptideRef="VEATFGVDESNAK" >
 
385
      <cvParam cvRef="" accession="" name="annotation" value="VEATFGVDESNAK0"/>
 
386
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.59"/>
 
387
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="55.7"/>
 
388
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
389
      <Precursor>
 
390
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="683.827" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
391
      </Precursor>
 
392
      <Product>
 
393
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="966.453" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
394
      </Product>
 
395
    </Transition>
 
396
    <Transition id="AQRT.YILAGVENSK.2_y8_1.light" peptideRef="YILAGVENSK" >
 
397
      <cvParam cvRef="" accession="" name="annotation" value="YILAGVENSK0"/>
 
398
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="29.58"/>
 
399
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="100"/>
 
400
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
401
      <Precursor>
 
402
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="547.297" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
403
      </Precursor>
 
404
      <Product>
 
405
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="817.442" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
406
      </Product>
 
407
    </Transition>
 
408
    <Transition id="AQRT.YILAGVENSK.2_y6_1.light" peptideRef="YILAGVENSK" >
 
409
      <cvParam cvRef="" accession="" name="annotation" value="YILAGVENSK0"/>
 
410
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="29.58"/>
 
411
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="54.1"/>
 
412
      <cvParam cvRef="MS" accession="decoy" name="decoy" value="0"/>
 
413
      <Precursor>
 
414
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="547.297" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
415
      </Precursor>
 
416
      <Product>
 
417
       <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="633.321" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
418
      </Product>
 
419
    </Transition>
 
420
    <Transition id="454" peptideRef="78">
 
421
      <Precursor>
 
422
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="722.685" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
423
      </Precursor>
 
424
      <Product>
 
425
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="358.179"/>
 
426
      </Product>
 
427
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="-1"/>
 
428
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="2714"/>
 
429
      <cvParam cvRef="MS" accession="MS:1002007" name="target SRM transition"/>
 
430
      <userParam name="annotation" type="xsd:string" value="b3"/>
 
431
    </Transition>
 
432
    <Transition id="454" peptideRef="78">
 
433
      <Precursor>
 
434
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="722.685" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
 
435
      </Precursor>
 
436
      <Product>
 
437
        <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="458.179"/>
 
438
      </Product>
 
439
      <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="-1"/>
 
440
      <cvParam cvRef="MS" accession="MS:1001226" name="product ion intensity" value="2714"/>
 
441
      <cvParam cvRef="MS" accession="MS:1002007" name="target SRM transition"/>
 
442
      <userParam name="annotation" type="xsd:string" value="b3"/>
 
443
    </Transition>
 
444
  </TransitionList>
 
445
</TraML>