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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a></li> </ul>
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<div class="title">PeakIndex Struct Reference</div> </div>
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<div class="contents">
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<p>Index of a peak or feature.
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<a href="structOpenMS_1_1PeakIndex.html#details">More...</a></p>
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<p><code>#include <<a class="el" href="PeakIndex_8h_source.html">OpenMS/KERNEL/PeakIndex.h</a>></code></p>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:ab14f4e82cafc32dff9a8686205403caa"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#ab14f4e82cafc32dff9a8686205403caa">PeakIndex</a> ()</td></tr>
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<tr class="memdesc:ab14f4e82cafc32dff9a8686205403caa"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. Creates an invalid peak reference. <a href="#ab14f4e82cafc32dff9a8686205403caa">More...</a><br/></td></tr>
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<tr class="separator:ab14f4e82cafc32dff9a8686205403caa"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aa935f1f446781e9ca689807077f6d70c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#aa935f1f446781e9ca689807077f6d70c">PeakIndex</a> (<a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">peak</a>)</td></tr>
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<tr class="memdesc:aa935f1f446781e9ca689807077f6d70c"><td class="mdescLeft"> </td><td class="mdescRight">Constructor that sets the peak index (for feaure maps) <a href="#aa935f1f446781e9ca689807077f6d70c">More...</a><br/></td></tr>
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<tr class="memitem:afaa7b5a3871130dfe747528bf71f51eb"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#afaa7b5a3871130dfe747528bf71f51eb">PeakIndex</a> (<a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">spectrum</a>, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">peak</a>)</td></tr>
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<tr class="memdesc:afaa7b5a3871130dfe747528bf71f51eb"><td class="mdescLeft"> </td><td class="mdescRight">Constructor that sets the peak and spectrum index (for peak maps) <a href="#afaa7b5a3871130dfe747528bf71f51eb">More...</a><br/></td></tr>
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<tr class="memitem:aac1b70a2ed67ead038c4d3f5ac4d8a81"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#aac1b70a2ed67ead038c4d3f5ac4d8a81">isValid</a> () const </td></tr>
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<tr class="memdesc:aac1b70a2ed67ead038c4d3f5ac4d8a81"><td class="mdescLeft"> </td><td class="mdescRight">returns if the current peak ref is valid <a href="#aac1b70a2ed67ead038c4d3f5ac4d8a81">More...</a><br/></td></tr>
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<tr class="memitem:ac8bb3912a3ce86b15842e79d0b421204"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#ac8bb3912a3ce86b15842e79d0b421204">clear</a> ()</td></tr>
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<tr class="memdesc:ac8bb3912a3ce86b15842e79d0b421204"><td class="mdescLeft"> </td><td class="mdescRight">Invalidates the current index. <a href="#ac8bb3912a3ce86b15842e79d0b421204">More...</a><br/></td></tr>
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<tr class="memitem:a7964d7f08b6732699e3e86111f185649"><td class="memTemplParams" colspan="2">template<typename FeatureMapType > </td></tr>
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<tr class="memitem:a7964d7f08b6732699e3e86111f185649"><td class="memTemplItemLeft" align="right" valign="top">const FeatureMapType::value_type & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#a7964d7f08b6732699e3e86111f185649">getFeature</a> (const FeatureMapType &map) const </td></tr>
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<tr class="memdesc:a7964d7f08b6732699e3e86111f185649"><td class="mdescLeft"> </td><td class="mdescRight">Access to the feature (or consensus feature) corresponding to this index. <a href="#a7964d7f08b6732699e3e86111f185649">More...</a><br/></td></tr>
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<tr class="memitem:a7fc5292f4ba9ca9642d565c0bc52f5af"><td class="memTemplParams" colspan="2">template<typename PeakMapType > </td></tr>
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<tr class="memitem:a7fc5292f4ba9ca9642d565c0bc52f5af"><td class="memTemplItemLeft" align="right" valign="top">const PeakMapType::PeakType & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#a7fc5292f4ba9ca9642d565c0bc52f5af">getPeak</a> (const PeakMapType &map) const </td></tr>
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<tr class="memdesc:a7fc5292f4ba9ca9642d565c0bc52f5af"><td class="mdescLeft"> </td><td class="mdescRight">Access to a peak corresponding to this index. <a href="#a7fc5292f4ba9ca9642d565c0bc52f5af">More...</a><br/></td></tr>
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<tr class="memitem:ae1302e8c1dc9de4b726ea79347bf2dd9"><td class="memTemplParams" colspan="2">template<typename PeakMapType > </td></tr>
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<tr class="memitem:ae1302e8c1dc9de4b726ea79347bf2dd9"><td class="memTemplItemLeft" align="right" valign="top">const PeakMapType::SpectrumType & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#ae1302e8c1dc9de4b726ea79347bf2dd9">getSpectrum</a> (const PeakMapType &map) const </td></tr>
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<tr class="memdesc:ae1302e8c1dc9de4b726ea79347bf2dd9"><td class="mdescLeft"> </td><td class="mdescRight">Access to a spectrum corresponding to this index. <a href="#ae1302e8c1dc9de4b726ea79347bf2dd9">More...</a><br/></td></tr>
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<tr class="memitem:a6ff004bc484a723c1903508f27ea3d4c"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#a6ff004bc484a723c1903508f27ea3d4c">operator==</a> (const <a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> &rhs) const </td></tr>
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<tr class="memdesc:a6ff004bc484a723c1903508f27ea3d4c"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#a6ff004bc484a723c1903508f27ea3d4c">More...</a><br/></td></tr>
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<tr class="memitem:a180ac47a3cf1d8780eaf2797610df1a5"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#a180ac47a3cf1d8780eaf2797610df1a5">operator!=</a> (const <a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> &rhs) const </td></tr>
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<tr class="memdesc:a180ac47a3cf1d8780eaf2797610df1a5"><td class="mdescLeft"> </td><td class="mdescRight">Inequality operator. <a href="#a180ac47a3cf1d8780eaf2797610df1a5">More...</a><br/></td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
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Public Attributes</h2></td></tr>
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<tr class="memitem:af40104dc784144260a2345e53e5f0305"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">peak</a></td></tr>
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<tr class="memdesc:af40104dc784144260a2345e53e5f0305"><td class="mdescLeft"> </td><td class="mdescRight">Peak or feature index. <a href="#af40104dc784144260a2345e53e5f0305">More...</a><br/></td></tr>
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<tr class="memitem:ae90f6d024629703c9ba0dbd5eb5ef4b2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">spectrum</a></td></tr>
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<tr class="memdesc:ae90f6d024629703c9ba0dbd5eb5ef4b2"><td class="mdescLeft"> </td><td class="mdescRight">Spectrum index. <a href="#ae90f6d024629703c9ba0dbd5eb5ef4b2">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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<div class="textblock"><p>Index of a peak or feature. </p>
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<p>This struct can be used to store both peak or feature indices. </p>
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</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> </td>
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<td class="paramname"></td><td>)</td>
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<p>Default constructor. Creates an invalid peak reference. </p>
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<td class="memname"><a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td>
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<td class="paramname"><em>peak</em></td><td>)</td>
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<p>Constructor that sets the peak index (for feaure maps) </p>
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<td class="memname"><a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td>
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<td class="paramname"><em>spectrum</em>, </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td>
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<td class="paramname"><em>peak</em> </td>
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<p>Constructor that sets the peak and spectrum index (for peak maps) </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">void clear </td>
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<p>Invalidates the current index. </p>
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<p>References <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex::peak</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">PeakIndex::spectrum</a>.</p>
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<td class="memname">const FeatureMapType::value_type& getFeature </td>
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<td class="paramtype">const FeatureMapType & </td>
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<td class="paramname"><em>map</em></td><td>)</td>
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<p>Access to the feature (or consensus feature) corresponding to this index. </p>
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<p>This method is intended for arrays of features e.g. <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a></p>
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<p>The main advantage of using this method instead accessing the data directly is that range check performed in debug mode.</p>
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<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1Precondition.html" title="Precondition failed exception. ">Exception::Precondition</a></td><td>is thrown if this index is invalid for the <code>map</code> (only in debug mode) </td></tr>
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<p>References <a class="el" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex::peak</a>.</p>
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<td class="memname">const PeakMapType::PeakType& getPeak </td>
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<td class="paramtype">const PeakMapType & </td>
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<td class="paramname"><em>map</em></td><td>)</td>
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<p>Access to a peak corresponding to this index. </p>
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<p>This method is intended for arrays of DSpectra e.g. <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a></p>
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<p>The main advantage of using this method instead accessing the data directly is that range check performed in debug mode.</p>
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<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1Precondition.html" title="Precondition failed exception. ">Exception::Precondition</a></td><td>is thrown if this index is invalid for the <code>map</code> (only in debug mode) </td></tr>
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<p>References <a class="el" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex::peak</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">PeakIndex::spectrum</a>.</p>
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<td class="memname">const PeakMapType::SpectrumType& getSpectrum </td>
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<td class="paramtype">const PeakMapType & </td>
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<td class="paramname"><em>map</em></td><td>)</td>
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<p>Access to a spectrum corresponding to this index. </p>
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<p>This method is intended for arrays of DSpectra e.g. <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>.</p>
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<p>The main advantage of using this method instead accessing the data directly is that range check performed in debug mode.</p>
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<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1Precondition.html" title="Precondition failed exception. ">Exception::Precondition</a></td><td>is thrown if this index is invalid for the <code>map</code> (only in debug mode) </td></tr>
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<p>References <a class="el" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">PeakIndex::spectrum</a>.</p>
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<p>returns if the current peak ref is valid </p>
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<p>References <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex::peak</a>.</p>
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<td class="memname">bool operator!= </td>
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<td class="paramtype">const <a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> & </td>
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<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Inequality operator. </p>
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<p>References <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex::peak</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">PeakIndex::spectrum</a>.</p>
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<td class="memname">bool operator== </td>
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<td class="paramtype">const <a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a> & </td>
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<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Equality operator. </p>
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<p>References <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex::peak</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#ae90f6d024629703c9ba0dbd5eb5ef4b2">PeakIndex::spectrum</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> peak</td>
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<p>Peak or feature index. </p>
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<p>Referenced by <a class="el" href="structOpenMS_1_1PeakIndex.html#ac8bb3912a3ce86b15842e79d0b421204">PeakIndex::clear()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#a7964d7f08b6732699e3e86111f185649">PeakIndex::getFeature()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#a7fc5292f4ba9ca9642d565c0bc52f5af">PeakIndex::getPeak()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#aac1b70a2ed67ead038c4d3f5ac4d8a81">PeakIndex::isValid()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#a180ac47a3cf1d8780eaf2797610df1a5">PeakIndex::operator!=()</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#a6ff004bc484a723c1903508f27ea3d4c">PeakIndex::operator==()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> spectrum</td>
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<p>Spectrum index. </p>
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<p>Referenced by <a class="el" href="structOpenMS_1_1PeakIndex.html#ac8bb3912a3ce86b15842e79d0b421204">PeakIndex::clear()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#a7fc5292f4ba9ca9642d565c0bc52f5af">PeakIndex::getPeak()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#ae1302e8c1dc9de4b726ea79347bf2dd9">PeakIndex::getSpectrum()</a>, <a class="el" href="structOpenMS_1_1PeakIndex.html#a180ac47a3cf1d8780eaf2797610df1a5">PeakIndex::operator!=()</a>, and <a class="el" href="structOpenMS_1_1PeakIndex.html#a6ff004bc484a723c1903508f27ea3d4c">PeakIndex::operator==()</a>.</p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:32 using doxygen 1.8.5</font></TD>
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