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<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_d5c86c02180db504975e24557b30e7a8.html">COMPARISON</a></li><li class="navelem"><a class="el" href="dir_1bbbc056fe5607052554feb90731e299.html">SPECTRA</a></li> </ul>
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<div class="title">SteinScottImproveScore.h</div> </div>
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<a href="SteinScottImproveScore_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
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<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
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<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
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<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
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<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
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<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
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<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
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<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
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<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
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<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
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<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
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<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
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<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
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<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
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<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
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<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
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<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
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<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
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<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
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<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
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<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
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<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
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<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Erhan Kenar $</span></div>
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<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Vipul Patel $</span></div>
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<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_COMPARISON_SPECTRA_STEINSCOTTIMPROVESCORE_H</span></div>
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<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_COMPARISON_SPECTRA_STEINSCOTTIMPROVESCORE_H</span></div>
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<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
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<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="PeakSpectrumCompareFunctor_8h.html">OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h</a>></span></div>
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<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <cmath></span></div>
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<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> </div>
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<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="keyword">namespace </span>OpenMS</div>
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<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> {</div>
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<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SteinScottImproveScore.html"> 69</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a> :</div>
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<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a></div>
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<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  {</div>
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<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
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<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="keyword">public</span>:</div>
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<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a>();</div>
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<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a> & source);</div>
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<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="keyword">virtual</span> ~<a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a>();</div>
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<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a> & operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a> & source);</div>
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<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keywordtype">double</span> operator()(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">PeakSpectrum</a> & spec1, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">PeakSpectrum</a> & spec2) <span class="keyword">const</span>;</div>
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<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="keywordtype">double</span> operator()(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MSSpectrum.html">PeakSpectrum</a> & spec) <span class="keyword">const</span>;</div>
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<div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SteinScottImproveScore.html#aea33b1d3b12fac714a9b5a9489d9ce10"> 94</a></span>  <span class="keyword">static</span> <a class="code" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a> * <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html#aea33b1d3b12fac714a9b5a9489d9ce10">create</a>()</div>
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<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  {</div>
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<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="keywordflow">return</span> <span class="keyword">new</span> <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a>();</div>
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<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  }</div>
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<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> </div>
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<div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="classOpenMS_1_1SteinScottImproveScore.html#af73fd15708e50e77665070023a09cc87"> 99</a></span>  <span class="keyword">static</span> <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1SteinScottImproveScore.html#af73fd15708e50e77665070023a09cc87">getProductName</a>()</div>
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<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  {</div>
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<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keywordflow">return</span> <span class="stringliteral">"SteinScottImproveScore"</span>;</div>
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<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  }</div>
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<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> </div>
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<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  };</div>
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<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> }</div>
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<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> </div>
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<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> </div>
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<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> <span class="preprocessor">#endif </span><span class="comment">/*OPENMS_COMPARISON_SPECTRA_STEINSCOTTIMPROVESCORE_H*/</span><span class="preprocessor"></span></div>
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<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
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<div class="ttc" id="classOpenMS_1_1SteinScottImproveScore_html"><div class="ttname"><a href="classOpenMS_1_1SteinScottImproveScore.html">OpenMS::SteinScottImproveScore</a></div><div class="ttdoc">Similarity score based of Stein &amp; Scott. </div><div class="ttdef"><b>Definition:</b> SteinScottImproveScore.h:69</div></div>
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<div class="ttc" id="classOpenMS_1_1SteinScottImproveScore_html_aea33b1d3b12fac714a9b5a9489d9ce10"><div class="ttname"><a href="classOpenMS_1_1SteinScottImproveScore.html#aea33b1d3b12fac714a9b5a9489d9ce10">OpenMS::SteinScottImproveScore::create</a></div><div class="ttdeci">static PeakSpectrumCompareFunctor * create()</div><div class="ttdef"><b>Definition:</b> SteinScottImproveScore.h:94</div></div>
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<div class="ttc" id="classOpenMS_1_1MSSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum< Peak1D ></a></div></div>
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<div class="ttc" id="classOpenMS_1_1SteinScottImproveScore_html_af73fd15708e50e77665070023a09cc87"><div class="ttname"><a href="classOpenMS_1_1SteinScottImproveScore.html#af73fd15708e50e77665070023a09cc87">OpenMS::SteinScottImproveScore::getProductName</a></div><div class="ttdeci">static const String getProductName()</div><div class="ttdef"><b>Definition:</b> SteinScottImproveScore.h:99</div></div>
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<div class="ttc" id="classOpenMS_1_1PeakSpectrumCompareFunctor_html"><div class="ttname"><a href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">OpenMS::PeakSpectrumCompareFunctor</a></div><div class="ttdoc">Base class for compare functors of spectra, that return a similiarity value for two spectra...</div><div class="ttdef"><b>Definition:</b> PeakSpectrumCompareFunctor.h:53</div></div>
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<div class="ttc" id="PeakSpectrumCompareFunctor_8h_html"><div class="ttname"><a href="PeakSpectrumCompareFunctor_8h.html">PeakSpectrumCompareFunctor.h</a></div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:21 using doxygen 1.8.5</font></TD>
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