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Viewing changes to source/TEST/TOPP/IDRipper_1_input.idXML

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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source/TEST/TOPP/IDRipper_1_input.idXML
 
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<?xml version="1.0" encoding="UTF-8"?>
 
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<?xml-stylesheet type="text/xsl" href="http://open-ms.sourceforge.net/XSL/IdXML.xsl" ?>
 
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<IdXML version="1.2" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/SCHEMAS/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
 
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        <SearchParameters id="SP_0" db="" db_version="" taxonomy="" mass_type="monoisotopic" charges="" enzyme="unknown_enzyme" missed_cleavages="0" precursor_peak_tolerance="0" peak_mass_tolerance="0" >
 
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        </SearchParameters>
 
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        <IdentificationRun date="2012-06-14T15:47:34" search_engine="OpenMS/ConsensusID" search_engine_version="1.10.0" search_parameters_ref="SP_0" >
 
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                <ProteinIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" >
 
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                        <ProteinHit id="PH_0" accession="IPI:CON_00009865.2|SWISS-PROT:P13645" score="0.906822979450226" sequence="" >
 
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                                <UserParam type="float" name="_score" value="0"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_1" accession="IPI:CON_00009867.3|SWISS-PROT:P13647" score="0.906822979450226" sequence="" >
 
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                                <UserParam type="float" name="_score" value="0"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_2" accession="IPI:CON_00019359.3|SWISS-PROT:P35527" score="0.906822979450226" sequence="" >
 
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                                <UserParam type="float" name="_score" value="0"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_3" accession="IPI:CON_00021304.1|SWISS-PROT:P35908" score="0.906822979450226" sequence="" >
 
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                                <UserParam type="float" name="_score" value="0"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_4" accession="IPI:CON_00124499.2|TREMBL:Q8VED5" score="0.906822979450226" sequence="" >
 
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                                <UserParam type="float" name="_score" value="0"/>
 
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                        </ProteinHit>
 
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                        <ProteinHit id="PH_5" accession="IPI:CON_00131368.3|SWISS-PROT:P50446" score="0.906822979450226" sequence="" >
 
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                                <UserParam type="float" name="_score" value="0"/>
 
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                        </ProteinHit>
 
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                </ProteinIdentification>
 
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                <PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="708.320251464844" RT="4636.2805" >
 
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                        <PeptideHit score="0.00149860843502462" sequence="FTDEEVDELYR" charge="2" protein_refs="PH_0 PH_1" >
 
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                                <UserParam type="float" name="similarity" value="1"/>
 
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                                <UserParam type="float" name="Number of annotations" value="1"/>
 
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                                <UserParam type="string" name="target_decoy" value="target"/>
 
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                                <UserParam type="string" name="protein_references" value="non-unique"/>
 
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                                <UserParam type="float" name="Consensus_PEPMatrix ()_score" value="0.028557725198821"/>
 
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                        </PeptideHit>
 
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                        <UserParam type="string" name="file_origin" value="IDRipper_1_output_1.tmp"/>
 
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                </PeptideIdentification>
 
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                <PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="744.881164550781" RT="4636.7642" >
 
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                        <PeptideHit score="0" sequence="TVLDPVTGDLSDTR" charge="2" protein_refs="PH_2" >
 
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                                <UserParam type="float" name="similarity" value="1"/>
 
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                                <UserParam type="float" name="Number of annotations" value="1"/>
 
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                                <UserParam type="string" name="target_decoy" value="target"/>
 
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                                <UserParam type="string" name="protein_references" value="unique"/>
 
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                                <UserParam type="float" name="Consensus_PEPMatrix ()_score" value="6.54552399361127e-06"/>
 
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                        </PeptideHit>
 
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                        <UserParam type="string" name="file_origin" value="IDRipper_1_output_1.tmp"/>
 
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                </PeptideIdentification>
 
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                <PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="917.976318359375" RT="7245.0734" >
 
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                        <PeptideHit score="0.0014199890770071" sequence="GFFELFPSLSHNLLVD" charge="2" protein_refs="PH_2 PH_3 PH_4" >
 
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                                <UserParam type="float" name="similarity" value="1"/>
 
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                                <UserParam type="float" name="Number of annotations" value="1"/>
 
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                                <UserParam type="string" name="target_decoy" value="target"/>
 
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                                <UserParam type="string" name="protein_references" value="non-unique"/>
 
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                                <UserParam type="float" name="Consensus_PEPMatrix ()_score" value="0.0239622082274354"/>
 
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                        </PeptideHit>
 
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                        <UserParam type="string" name="file_origin" value="IDRipper_1_output_2.tmp"/>
 
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                </PeptideIdentification>
 
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                <PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="762.413024902344" RT="7373.0077" >
 
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                        <PeptideHit score="0" sequence="LAPVPFFSLLQYE" charge="2" protein_refs="PH_5" >
 
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                                <UserParam type="float" name="similarity" value="1"/>
 
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                                <UserParam type="float" name="Number of annotations" value="1"/>
 
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                                <UserParam type="string" name="target_decoy" value="target"/>
 
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                                <UserParam type="string" name="protein_references" value="unique"/>
 
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                                <UserParam type="float" name="Consensus_PEPMatrix ()_score" value="0.000812746175428687"/>
 
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                        </PeptideHit>
 
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                        <UserParam type="string" name="file_origin" value="IDRipper_1_output_2.tmp"/>
 
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                </PeptideIdentification>
 
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        </IdentificationRun>
 
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</IdXML>