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Viewing changes to pyOpenMS/pxds/ItraqConstants.pxd

  • Committer: Package Import Robot
  • Author(s): Filippo Rusconi
  • Date: 2013-12-20 11:30:16 UTC
  • mfrom: (5.1.2 sid)
  • Revision ID: package-import@ubuntu.com-20131220113016-wre5g9bteeheq6he
Tags: 1.11.1-3
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.

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pyOpenMS/pxds/ItraqConstants.pxd
 
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from libcpp.vector cimport vector as libcpp_vector
 
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from libcpp cimport bool
 
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from Types cimport *
 
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from Map cimport *
 
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from Peak2D cimport *
 
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from String cimport *
 
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from StringList cimport *
 
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from Matrix cimport *
 
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# ctypedef Map<Int, ChannelInfo> ChannelMapType; 
 
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# ctypedef std::vector<Matrix<double> > IsotopeMatrices;
 
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cdef extern from "<OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h>" namespace "OpenMS":
 
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    cdef cppclass ItraqConstants "OpenMS::ItraqConstants":
 
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        ItraqConstants() nogil except + 
 
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        ItraqConstants(ItraqConstants) nogil except + #wrap-ignore
 
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        # Int CHANNEL_COUNT()
 
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        # Int CHANNELS_FOURPLEX()
 
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        # Int CHANNELS_EIGHTPLEX()
 
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        # Int CHANNELS_TMT_SIXPLEX()
 
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        # double ISOTOPECORRECTIONS_FOURPLEX()
 
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        # double ISOTOPECORRECTIONS_EIGHTPLEX()
 
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        # double ISOTOPECORRECTIONS_TMT_SIXPLEX()
 
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        StringList getIsotopeMatrixAsStringList(int itraq_type, libcpp_vector[Matrix[double] ] & isotope_corrections) nogil except +
 
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        void updateIsotopeMatrixFromStringList(int itraq_type, StringList & channels, libcpp_vector[Matrix[double] ] & isotope_corrections) nogil except +
 
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        # void initChannelMap(int itraq_type, ChannelMapType & map_) nogil except +
 
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        # void updateChannelMap(StringList & active_channels, ChannelMapType & map_) nogil except +
 
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        Matrix[ double ] translateIsotopeMatrix(int & itraq_type, libcpp_vector[Matrix[double] ] & isotope_corrections) nogil except +
 
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cdef extern from "<OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h>" namespace "OpenMS::ItraqConstants":
 
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    cdef enum ITRAQ_TYPES:
 
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        FOURPLEX, EIGHTPLEX, TMT_SIXPLEX, SIZE_OF_ITRAQ_TYPES
 
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    cdef cppclass ChannelInfo "OpenMS::ItraqConstants::ChannelInfo":
 
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        ChannelInfo(ChannelInfo) nogil except + #wrap-ignore
 
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        # TODO string variable
 
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        # String description
 
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        Int name
 
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        Int id
 
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        DoubleReal center
 
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        bool active
 
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