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Viewing changes to Bio/SeqUtils.pm

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Bio/SeqUtils.pm
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# $Id: SeqUtils.pm,v 1.34.2.2 2006/11/16 19:05:59 cjfields Exp $
 
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# $Id: SeqUtils.pm 15115 2008-12-08 20:00:49Z cjfields $
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#
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# BioPerl module for Bio::SeqUtils
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#
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    use Bio::SeqUtils;
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    # get a Bio::PrimarySeqI compliant object, $seq, somehow
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    $util = new Bio::SeqUtils;
 
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    $util = Bio::SeqUtils->new();
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    $polypeptide_3char = $util->seq3($seq);
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    # or
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    $polypeptide_3char = Bio::SeqUtils->seq3($seq);
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=head1 CONTRIBUTORS
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Roy Chaudhuri, roy at colibase d bham d ac d uk
 
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Roy R. Chaudhuri <roy.chaudhuri at gmail.com>
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=head1 APPENDIX
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