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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/psiblast.xml
 
1
<?xml version="1.0"?>
 
2
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 
3
<BlastOutput>
 
4
  <BlastOutput_program>blastp</BlastOutput_program>
 
5
  <BlastOutput_version>blastp 2.2.16 [Mar-25-2007]</BlastOutput_version>
 
6
  <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;,  Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
 
7
  <BlastOutput_db>AL591824.faa</BlastOutput_db>
 
8
  <BlastOutput_query-ID>lcl|QUERY</BlastOutput_query-ID>
 
9
  <BlastOutput_query-def>gi|1373160|gb|AAB57770.1| PyrR</BlastOutput_query-def>
 
10
  <BlastOutput_query-len>173</BlastOutput_query-len>
 
11
  <BlastOutput_param>
 
12
    <Parameters>
 
13
      <Parameters_matrix>BLOSUM62</Parameters_matrix>
 
14
      <Parameters_expect>10</Parameters_expect>
 
15
      <Parameters_include>0.002</Parameters_include>
 
16
      <Parameters_gap-open>11</Parameters_gap-open>
 
17
      <Parameters_gap-extend>1</Parameters_gap-extend>
 
18
      <Parameters_filter>F</Parameters_filter>
 
19
    </Parameters>
 
20
  </BlastOutput_param>
 
21
  <BlastOutput_iterations>
 
22
    <Iteration>
 
23
      <Iteration_iter-num>1</Iteration_iter-num>
 
24
      <Iteration_hits>
 
25
        <Hit>
 
26
          <Hit_num>1</Hit_num>
 
27
          <Hit_id>gi|16411294|emb|CAC99918.1|</Hit_id>
 
28
          <Hit_def>pyrR [Listeria monocytogenes]</Hit_def>
 
29
          <Hit_accession>CAC99918</Hit_accession>
 
30
          <Hit_len>183</Hit_len>
 
31
          <Hit_hsps>
 
32
            <Hsp>
 
33
              <Hsp_num>1</Hsp_num>
 
34
              <Hsp_bit-score>209.92</Hsp_bit-score>
 
35
              <Hsp_score>533</Hsp_score>
 
36
              <Hsp_evalue>4.5377e-56</Hsp_evalue>
 
37
              <Hsp_query-from>1</Hsp_query-from>
 
38
              <Hsp_query-to>171</Hsp_query-to>
 
39
              <Hsp_hit-from>1</Hsp_hit-from>
 
40
              <Hsp_hit-to>172</Hsp_hit-to>
 
41
              <Hsp_query-frame>1</Hsp_query-frame>
 
42
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
43
              <Hsp_identity>117</Hsp_identity>
 
44
              <Hsp_positive>140</Hsp_positive>
 
45
              <Hsp_gaps>1</Hsp_gaps>
 
46
              <Hsp_align-len>172</Hsp_align-len>
 
47
              <Hsp_qseq>MNQKAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS-KKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ</Hsp_qseq>
 
48
              <Hsp_hseq>MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDH</Hsp_hseq>
 
49
              <Hsp_midline>M ++ V++DE AI+RALTR+++E+IERNKG  N  LVGIKTRGIYLA+RL +RI +IEG  V VG+IDITLYRDDLS K     EP V G +IP DI  +KV+LVDDVLYTGRTVRA MDAL+DVGRP+ I LAVL DRGHRELPIRADY+GKNIPTS +E+V V+L +VD </Hsp_midline>
 
50
            </Hsp>
 
51
          </Hit_hsps>
 
52
        </Hit>
 
53
        <Hit>
 
54
          <Hit_num>2</Hit_num>
 
55
          <Hit_id>gi|16409584|emb|CAD00746.1|</Hit_id>
 
56
          <Hit_def>fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria monocytogenes]</Hit_def>
 
57
          <Hit_accession>CAD00746</Hit_accession>
 
58
          <Hit_len>648</Hit_len>
 
59
          <Hit_hsps>
 
60
            <Hsp>
 
61
              <Hsp_num>1</Hsp_num>
 
62
              <Hsp_bit-score>37.7354</Hsp_bit-score>
 
63
              <Hsp_score>86</Hsp_score>
 
64
              <Hsp_evalue>0.000286309</Hsp_evalue>
 
65
              <Hsp_query-from>4</Hsp_query-from>
 
66
              <Hsp_query-to>155</Hsp_query-to>
 
67
              <Hsp_hit-from>475</Hsp_hit-from>
 
68
              <Hsp_hit-to>617</Hsp_hit-to>
 
69
              <Hsp_query-frame>1</Hsp_query-frame>
 
70
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
71
              <Hsp_identity>32</Hsp_identity>
 
72
              <Hsp_positive>78</Hsp_positive>
 
73
              <Hsp_gaps>11</Hsp_gaps>
 
74
              <Hsp_align-len>153</Hsp_align-len>
 
75
              <Hsp_qseq>KAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDR-GHRELPIRADYIGKNIP</Hsp_qseq>
 
76
              <Hsp_hseq>QKVLISEDELQEKIRELGRELTTEYEG-RNPLVVGVLKGATPFMTDLLKRVDTY----LEMDFMDVSSYGN--GTVSSGEVKIIK--DLNASVEGRDVLVIEDIIDSGRTLSYLVD-LIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVP</Hsp_hseq>
 
77
              <Hsp_midline>+ V++ E  ++  +  +  E+    +G  N ++VG+          L +R++      + +  +D++ Y +     +S +  ++K  D+   +  + V++++D++ +GRT+   +D L+   +  S++L  L+D+   R + I ADY+G  +P</Hsp_midline>
 
78
            </Hsp>
 
79
          </Hit_hsps>
 
80
        </Hit>
 
81
        <Hit>
 
82
          <Hit_num>3</Hit_num>
 
83
          <Hit_id>gi|16411285|emb|CAC99909.1|</Hit_id>
 
84
          <Hit_def>pyrE [Listeria monocytogenes]</Hit_def>
 
85
          <Hit_accession>CAC99909</Hit_accession>
 
86
          <Hit_len>209</Hit_len>
 
87
          <Hit_hsps>
 
88
            <Hsp>
 
89
              <Hsp_num>1</Hsp_num>
 
90
              <Hsp_bit-score>29.261</Hsp_bit-score>
 
91
              <Hsp_score>64</Hsp_score>
 
92
              <Hsp_evalue>0.107059</Hsp_evalue>
 
93
              <Hsp_query-from>32</Hsp_query-from>
 
94
              <Hsp_query-to>125</Hsp_query-to>
 
95
              <Hsp_hit-from>38</Hsp_hit-from>
 
96
              <Hsp_hit-to>142</Hsp_hit-to>
 
97
              <Hsp_query-frame>1</Hsp_query-frame>
 
98
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
99
              <Hsp_identity>32</Hsp_identity>
 
100
              <Hsp_positive>53</Hsp_positive>
 
101
              <Hsp_gaps>33</Hsp_gaps>
 
102
              <Hsp_align-len>116</Hsp_align-len>
 
103
              <Hsp_qseq>NNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITL-----------YRDDLSKKTSNDEPLV----------KGADIPVDITD-QKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
 
104
              <Hsp_hseq>DNRLTLGFPKVRQFIAKSLAEKIKQ------TFGEIDVVAGTATAGIPHAAWVSDLL-----DLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAG</Hsp_hseq>
 
105
              <Hsp_midline>+N + +G      ++AK LAE+I+Q      T GEID+             +  DL      D P+V          KG  I   I+  QKV++++D++ TG +    ++AL + G</Hsp_midline>
 
106
            </Hsp>
 
107
          </Hit_hsps>
 
108
        </Hit>
 
109
        <Hit>
 
110
          <Hit_num>4</Hit_num>
 
111
          <Hit_id>gi|16409989|emb|CAC98678.1|</Hit_id>
 
112
          <Hit_def>lmo0600 [Listeria monocytogenes]</Hit_def>
 
113
          <Hit_accession>CAC98678</Hit_accession>
 
114
          <Hit_len>196</Hit_len>
 
115
          <Hit_hsps>
 
116
            <Hsp>
 
117
              <Hsp_num>1</Hsp_num>
 
118
              <Hsp_bit-score>28.4906</Hsp_bit-score>
 
119
              <Hsp_score>62</Hsp_score>
 
120
              <Hsp_evalue>0.15199</Hsp_evalue>
 
121
              <Hsp_query-from>123</Hsp_query-from>
 
122
              <Hsp_query-to>149</Hsp_query-to>
 
123
              <Hsp_hit-from>49</Hsp_hit-from>
 
124
              <Hsp_hit-to>75</Hsp_hit-to>
 
125
              <Hsp_query-frame>1</Hsp_query-frame>
 
126
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
127
              <Hsp_identity>11</Hsp_identity>
 
128
              <Hsp_positive>16</Hsp_positive>
 
129
              <Hsp_align-len>27</Hsp_align-len>
 
130
              <Hsp_qseq>DVGRPSSIQLAVLVDRGHRELPIRADY</Hsp_qseq>
 
131
              <Hsp_hseq>DLGKPEEIAADIISERGIREEPTEMDY</Hsp_hseq>
 
132
              <Hsp_midline>D+G+P  I   ++ +RG RE P   DY</Hsp_midline>
 
133
            </Hsp>
 
134
          </Hit_hsps>
 
135
        </Hit>
 
136
        <Hit>
 
137
          <Hit_num>5</Hit_num>
 
138
          <Hit_id>gi|16411556|emb|CAD00164.1|</Hit_id>
 
139
          <Hit_def>lmo2086 [Listeria monocytogenes]</Hit_def>
 
140
          <Hit_accession>CAD00164</Hit_accession>
 
141
          <Hit_len>423</Hit_len>
 
142
          <Hit_hsps>
 
143
            <Hsp>
 
144
              <Hsp_num>1</Hsp_num>
 
145
              <Hsp_bit-score>25.7942</Hsp_bit-score>
 
146
              <Hsp_score>55</Hsp_score>
 
147
              <Hsp_evalue>1.0709</Hsp_evalue>
 
148
              <Hsp_query-from>49</Hsp_query-from>
 
149
              <Hsp_query-to>82</Hsp_query-to>
 
150
              <Hsp_hit-from>281</Hsp_hit-from>
 
151
              <Hsp_hit-to>313</Hsp_hit-to>
 
152
              <Hsp_query-frame>1</Hsp_query-frame>
 
153
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
154
              <Hsp_identity>14</Hsp_identity>
 
155
              <Hsp_positive>21</Hsp_positive>
 
156
              <Hsp_gaps>1</Hsp_gaps>
 
157
              <Hsp_align-len>34</Hsp_align-len>
 
158
              <Hsp_qseq>RLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSN</Hsp_qseq>
 
159
              <Hsp_hseq>KMAE-IENIEGNETLFYEKITCLYKEIMAYKTTN</Hsp_hseq>
 
160
              <Hsp_midline>++AE IE IEGN     E    LY++ ++ KT+N</Hsp_midline>
 
161
            </Hsp>
 
162
          </Hit_hsps>
 
163
        </Hit>
 
164
        <Hit>
 
165
          <Hit_num>6</Hit_num>
 
166
          <Hit_id>gi|16412165|emb|CAD00878.1|</Hit_id>
 
167
          <Hit_def>lmo2665 [Listeria monocytogenes]</Hit_def>
 
168
          <Hit_accession>CAD00878</Hit_accession>
 
169
          <Hit_len>423</Hit_len>
 
170
          <Hit_hsps>
 
171
            <Hsp>
 
172
              <Hsp_num>1</Hsp_num>
 
173
              <Hsp_bit-score>25.409</Hsp_bit-score>
 
174
              <Hsp_score>54</Hsp_score>
 
175
              <Hsp_evalue>1.43409</Hsp_evalue>
 
176
              <Hsp_query-from>109</Hsp_query-from>
 
177
              <Hsp_query-to>136</Hsp_query-to>
 
178
              <Hsp_hit-from>289</Hsp_hit-from>
 
179
              <Hsp_hit-to>316</Hsp_hit-to>
 
180
              <Hsp_query-frame>1</Hsp_query-frame>
 
181
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
182
              <Hsp_identity>8</Hsp_identity>
 
183
              <Hsp_positive>18</Hsp_positive>
 
184
              <Hsp_align-len>28</Hsp_align-len>
 
185
              <Hsp_qseq>YTGRTVRAGMDALVDVGRPSSIQLAVLV</Hsp_qseq>
 
186
              <Hsp_hseq>FKGRELYIGLDAALSIGHPANISTGLIL</Hsp_hseq>
 
187
              <Hsp_midline>+ GR +  G+DA + +G P++I   +++</Hsp_midline>
 
188
            </Hsp>
 
189
          </Hit_hsps>
 
190
        </Hit>
 
191
        <Hit>
 
192
          <Hit_num>7</Hit_num>
 
193
          <Hit_id>gi|16412220|emb|CAD00933.1|</Hit_id>
 
194
          <Hit_def>lmo2720 [Listeria monocytogenes]</Hit_def>
 
195
          <Hit_accession>CAD00933</Hit_accession>
 
196
          <Hit_len>525</Hit_len>
 
197
          <Hit_hsps>
 
198
            <Hsp>
 
199
              <Hsp_num>1</Hsp_num>
 
200
              <Hsp_bit-score>25.409</Hsp_bit-score>
 
201
              <Hsp_score>54</Hsp_score>
 
202
              <Hsp_evalue>1.49518</Hsp_evalue>
 
203
              <Hsp_query-from>58</Hsp_query-from>
 
204
              <Hsp_query-to>74</Hsp_query-to>
 
205
              <Hsp_hit-from>355</Hsp_hit-from>
 
206
              <Hsp_hit-to>372</Hsp_hit-to>
 
207
              <Hsp_query-frame>1</Hsp_query-frame>
 
208
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
209
              <Hsp_identity>12</Hsp_identity>
 
210
              <Hsp_positive>14</Hsp_positive>
 
211
              <Hsp_gaps>1</Hsp_gaps>
 
212
              <Hsp_align-len>18</Hsp_align-len>
 
213
              <Hsp_qseq>EGNPVTVGEI-DITLYRD</Hsp_qseq>
 
214
              <Hsp_hseq>DGNPVGVGEIGDIAMRRD</Hsp_hseq>
 
215
              <Hsp_midline>+GNPV VGEI DI + RD</Hsp_midline>
 
216
            </Hsp>
 
217
          </Hit_hsps>
 
218
        </Hit>
 
219
        <Hit>
 
220
          <Hit_num>8</Hit_num>
 
221
          <Hit_id>gi|16411665|emb|CAD00273.1|</Hit_id>
 
222
          <Hit_def>lmo2195 [Listeria monocytogenes]</Hit_def>
 
223
          <Hit_accession>CAD00273</Hit_accession>
 
224
          <Hit_len>309</Hit_len>
 
225
          <Hit_hsps>
 
226
            <Hsp>
 
227
              <Hsp_num>1</Hsp_num>
 
228
              <Hsp_bit-score>25.0238</Hsp_bit-score>
 
229
              <Hsp_score>53</Hsp_score>
 
230
              <Hsp_evalue>2.07022</Hsp_evalue>
 
231
              <Hsp_query-from>76</Hsp_query-from>
 
232
              <Hsp_query-to>109</Hsp_query-to>
 
233
              <Hsp_hit-from>262</Hsp_hit-from>
 
234
              <Hsp_hit-to>295</Hsp_hit-to>
 
235
              <Hsp_query-frame>1</Hsp_query-frame>
 
236
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
237
              <Hsp_identity>13</Hsp_identity>
 
238
              <Hsp_positive>19</Hsp_positive>
 
239
              <Hsp_align-len>34</Hsp_align-len>
 
240
              <Hsp_qseq>LSKKTSNDEPLVKGADIPVDITDQKVILVDDVLY</Hsp_qseq>
 
241
              <Hsp_hseq>VSSIQTNDYPVIMGTTILFAVMLVFVILVVDILY</Hsp_hseq>
 
242
              <Hsp_midline>+S   +ND P++ G  I   +    VILV D+LY</Hsp_midline>
 
243
            </Hsp>
 
244
          </Hit_hsps>
 
245
        </Hit>
 
246
        <Hit>
 
247
          <Hit_num>9</Hit_num>
 
248
          <Hit_id>gi|16412026|emb|CAD00616.1|</Hit_id>
 
249
          <Hit_def>upp [Listeria monocytogenes]</Hit_def>
 
250
          <Hit_accession>CAD00616</Hit_accession>
 
251
          <Hit_len>209</Hit_len>
 
252
          <Hit_hsps>
 
253
            <Hsp>
 
254
              <Hsp_num>1</Hsp_num>
 
255
              <Hsp_bit-score>24.6386</Hsp_bit-score>
 
256
              <Hsp_score>52</Hsp_score>
 
257
              <Hsp_evalue>2.21313</Hsp_evalue>
 
258
              <Hsp_query-from>69</Hsp_query-from>
 
259
              <Hsp_query-to>125</Hsp_query-to>
 
260
              <Hsp_hit-from>100</Hsp_hit-from>
 
261
              <Hsp_hit-to>151</Hsp_hit-to>
 
262
              <Hsp_query-frame>1</Hsp_query-frame>
 
263
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
264
              <Hsp_identity>17</Hsp_identity>
 
265
              <Hsp_positive>27</Hsp_positive>
 
266
              <Hsp_gaps>5</Hsp_gaps>
 
267
              <Hsp_align-len>57</Hsp_align-len>
 
268
              <Hsp_qseq>ITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
 
269
              <Hsp_hseq>VGLYRDH-----DTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRG</Hsp_hseq>
 
270
              <Hsp_midline>+ LYRD         EP+     +P D+ ++  I+VD +L TG +    +D L   G</Hsp_midline>
 
271
            </Hsp>
 
272
          </Hit_hsps>
 
273
        </Hit>
 
274
        <Hit>
 
275
          <Hit_num>10</Hit_num>
 
276
          <Hit_id>gi|16410953|emb|CAC99602.1|</Hit_id>
 
277
          <Hit_def>apt [Listeria monocytogenes]</Hit_def>
 
278
          <Hit_accession>CAC99602</Hit_accession>
 
279
          <Hit_len>173</Hit_len>
 
280
          <Hit_hsps>
 
281
            <Hsp>
 
282
              <Hsp_num>1</Hsp_num>
 
283
              <Hsp_bit-score>24.6386</Hsp_bit-score>
 
284
              <Hsp_score>52</Hsp_score>
 
285
              <Hsp_evalue>2.25037</Hsp_evalue>
 
286
              <Hsp_query-from>99</Hsp_query-from>
 
287
              <Hsp_query-to>125</Hsp_query-to>
 
288
              <Hsp_hit-from>115</Hsp_hit-from>
 
289
              <Hsp_hit-to>141</Hsp_hit-to>
 
290
              <Hsp_query-frame>1</Hsp_query-frame>
 
291
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
292
              <Hsp_identity>10</Hsp_identity>
 
293
              <Hsp_positive>19</Hsp_positive>
 
294
              <Hsp_align-len>27</Hsp_align-len>
 
295
              <Hsp_qseq>QKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
 
296
              <Hsp_hseq>QRVLITDDLLATGGTIEATIKLVEELG</Hsp_hseq>
 
297
              <Hsp_midline>Q+V++ DD+L TG T+ A +  + ++G</Hsp_midline>
 
298
            </Hsp>
 
299
          </Hit_hsps>
 
300
        </Hit>
 
301
        <Hit>
 
302
          <Hit_num>11</Hit_num>
 
303
          <Hit_id>gi|16410386|emb|CAC99062.1|</Hit_id>
 
304
          <Hit_def>lmo0984 [Listeria monocytogenes]</Hit_def>
 
305
          <Hit_accession>CAC99062</Hit_accession>
 
306
          <Hit_len>151</Hit_len>
 
307
          <Hit_hsps>
 
308
            <Hsp>
 
309
              <Hsp_num>1</Hsp_num>
 
310
              <Hsp_bit-score>24.2534</Hsp_bit-score>
 
311
              <Hsp_score>51</Hsp_score>
 
312
              <Hsp_evalue>2.91465</Hsp_evalue>
 
313
              <Hsp_query-from>58</Hsp_query-from>
 
314
              <Hsp_query-to>95</Hsp_query-to>
 
315
              <Hsp_hit-from>7</Hsp_hit-from>
 
316
              <Hsp_hit-to>40</Hsp_hit-to>
 
317
              <Hsp_query-frame>1</Hsp_query-frame>
 
318
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
319
              <Hsp_identity>12</Hsp_identity>
 
320
              <Hsp_positive>22</Hsp_positive>
 
321
              <Hsp_gaps>4</Hsp_gaps>
 
322
              <Hsp_align-len>38</Hsp_align-len>
 
323
              <Hsp_qseq>EGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVD</Hsp_qseq>
 
324
              <Hsp_hseq>QNNNLAVGEVDVYCHPDNLEEVTN----IVMGIDEPTE</Hsp_hseq>
 
325
              <Hsp_midline>+ N + VGE+D+  + D+L + T+    +V G D P +</Hsp_midline>
 
326
            </Hsp>
 
327
          </Hit_hsps>
 
328
        </Hit>
 
329
        <Hit>
 
330
          <Hit_num>12</Hit_num>
 
331
          <Hit_id>gi|16409884|emb|CAC98587.1|</Hit_id>
 
332
          <Hit_def>lmo0508 [Listeria monocytogenes]</Hit_def>
 
333
          <Hit_accession>CAC98587</Hit_accession>
 
334
          <Hit_len>423</Hit_len>
 
335
          <Hit_hsps>
 
336
            <Hsp>
 
337
              <Hsp_num>1</Hsp_num>
 
338
              <Hsp_bit-score>23.8682</Hsp_bit-score>
 
339
              <Hsp_score>50</Hsp_score>
 
340
              <Hsp_evalue>3.83855</Hsp_evalue>
 
341
              <Hsp_query-from>109</Hsp_query-from>
 
342
              <Hsp_query-to>136</Hsp_query-to>
 
343
              <Hsp_hit-from>288</Hsp_hit-from>
 
344
              <Hsp_hit-to>315</Hsp_hit-to>
 
345
              <Hsp_query-frame>1</Hsp_query-frame>
 
346
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
347
              <Hsp_identity>9</Hsp_identity>
 
348
              <Hsp_positive>17</Hsp_positive>
 
349
              <Hsp_align-len>28</Hsp_align-len>
 
350
              <Hsp_qseq>YTGRTVRAGMDALVDVGRPSSIQLAVLV</Hsp_qseq>
 
351
              <Hsp_hseq>FPGRELFIGLDSAVGIGHPFVLSLGLLM</Hsp_hseq>
 
352
              <Hsp_midline>+ GR +  G+D+ V +G P  + L +L+</Hsp_midline>
 
353
            </Hsp>
 
354
          </Hit_hsps>
 
355
        </Hit>
 
356
        <Hit>
 
357
          <Hit_num>13</Hit_num>
 
358
          <Hit_id>gi|16409885|emb|CAC98588.1|</Hit_id>
 
359
          <Hit_def>prs [Listeria monocytogenes]</Hit_def>
 
360
          <Hit_accession>CAC98588</Hit_accession>
 
361
          <Hit_len>311</Hit_len>
 
362
          <Hit_hsps>
 
363
            <Hsp>
 
364
              <Hsp_num>1</Hsp_num>
 
365
              <Hsp_bit-score>23.8682</Hsp_bit-score>
 
366
              <Hsp_score>50</Hsp_score>
 
367
              <Hsp_evalue>4.1379</Hsp_evalue>
 
368
              <Hsp_query-from>16</Hsp_query-from>
 
369
              <Hsp_query-to>133</Hsp_query-to>
 
370
              <Hsp_hit-from>148</Hsp_hit-from>
 
371
              <Hsp_hit-to>247</Hsp_hit-to>
 
372
              <Hsp_query-frame>1</Hsp_query-frame>
 
373
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
374
              <Hsp_identity>28</Hsp_identity>
 
375
              <Hsp_positive>51</Hsp_positive>
 
376
              <Hsp_gaps>18</Hsp_gaps>
 
377
              <Hsp_align-len>118</Hsp_align-len>
 
378
              <Hsp_qseq>ALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLA</Hsp_qseq>
 
379
              <Hsp_hseq>AIPLIGDYLIE-NYGEKDVVVVAPDHSGVVRARRIADRLNA----PIAI-----------LNRKPRPHEDEI--MSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACA</Hsp_hseq>
 
380
              <Hsp_midline>A+  I   +IE N G  + ++V     G+  A+R+A+R+      P+ +           L++K    E  +    +  D+  +  I+VDD++ TG       D L++ G    I  A</Hsp_midline>
 
381
            </Hsp>
 
382
          </Hit_hsps>
 
383
        </Hit>
 
384
        <Hit>
 
385
          <Hit_num>14</Hit_num>
 
386
          <Hit_id>gi|16411021|emb|CAC99670.1|</Hit_id>
 
387
          <Hit_def>lmo1592 [Listeria monocytogenes]</Hit_def>
 
388
          <Hit_accession>CAC99670</Hit_accession>
 
389
          <Hit_len>403</Hit_len>
 
390
          <Hit_hsps>
 
391
            <Hsp>
 
392
              <Hsp_num>1</Hsp_num>
 
393
              <Hsp_bit-score>23.483</Hsp_bit-score>
 
394
              <Hsp_score>49</Hsp_score>
 
395
              <Hsp_evalue>5.97338</Hsp_evalue>
 
396
              <Hsp_query-from>114</Hsp_query-from>
 
397
              <Hsp_query-to>154</Hsp_query-to>
 
398
              <Hsp_hit-from>88</Hsp_hit-from>
 
399
              <Hsp_hit-to>128</Hsp_hit-to>
 
400
              <Hsp_query-frame>1</Hsp_query-frame>
 
401
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
402
              <Hsp_identity>13</Hsp_identity>
 
403
              <Hsp_positive>19</Hsp_positive>
 
404
              <Hsp_align-len>41</Hsp_align-len>
 
405
              <Hsp_qseq>VRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNI</Hsp_qseq>
 
406
              <Hsp_hseq>VKAAALALVQDAHEENGTFKVAARRSHREFPLDSNEINQEI</Hsp_hseq>
 
407
              <Hsp_midline>V+A   ALV      +    V   R HRE P+ ++ I + I</Hsp_midline>
 
408
            </Hsp>
 
409
          </Hit_hsps>
 
410
        </Hit>
 
411
        <Hit>
 
412
          <Hit_num>15</Hit_num>
 
413
          <Hit_id>gi|16409435|emb|CAC98291.1|</Hit_id>
 
414
          <Hit_def>lmo0076 [Listeria monocytogenes]</Hit_def>
 
415
          <Hit_accession>CAC98291</Hit_accession>
 
416
          <Hit_len>350</Hit_len>
 
417
          <Hit_hsps>
 
418
            <Hsp>
 
419
              <Hsp_num>1</Hsp_num>
 
420
              <Hsp_bit-score>22.7126</Hsp_bit-score>
 
421
              <Hsp_score>47</Hsp_score>
 
422
              <Hsp_evalue>8.62304</Hsp_evalue>
 
423
              <Hsp_query-from>14</Hsp_query-from>
 
424
              <Hsp_query-to>44</Hsp_query-to>
 
425
              <Hsp_hit-from>5</Hsp_hit-from>
 
426
              <Hsp_hit-to>35</Hsp_hit-to>
 
427
              <Hsp_query-frame>1</Hsp_query-frame>
 
428
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
429
              <Hsp_identity>9</Hsp_identity>
 
430
              <Hsp_positive>16</Hsp_positive>
 
431
              <Hsp_align-len>31</Hsp_align-len>
 
432
              <Hsp_qseq>RRALTRIAHEMIERNKGMNNCILVGIKTRGI</Hsp_qseq>
 
433
              <Hsp_hseq>QRDIDKYYDMLVEKNSNYEGVFFVGVKTTGI</Hsp_hseq>
 
434
              <Hsp_midline>+R + +    ++E+N        VG+KT GI</Hsp_midline>
 
435
            </Hsp>
 
436
          </Hit_hsps>
 
437
        </Hit>
 
438
        <Hit>
 
439
          <Hit_num>16</Hit_num>
 
440
          <Hit_id>gi|16410603|emb|CAC99265.1|</Hit_id>
 
441
          <Hit_def>lmo1187 [Listeria monocytogenes]</Hit_def>
 
442
          <Hit_accession>CAC99265</Hit_accession>
 
443
          <Hit_len>147</Hit_len>
 
444
          <Hit_hsps>
 
445
            <Hsp>
 
446
              <Hsp_num>1</Hsp_num>
 
447
              <Hsp_bit-score>22.7126</Hsp_bit-score>
 
448
              <Hsp_score>47</Hsp_score>
 
449
              <Hsp_evalue>9.06572</Hsp_evalue>
 
450
              <Hsp_query-from>106</Hsp_query-from>
 
451
              <Hsp_query-to>134</Hsp_query-to>
 
452
              <Hsp_hit-from>102</Hsp_hit-from>
 
453
              <Hsp_hit-to>130</Hsp_hit-to>
 
454
              <Hsp_query-frame>1</Hsp_query-frame>
 
455
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
456
              <Hsp_identity>11</Hsp_identity>
 
457
              <Hsp_positive>18</Hsp_positive>
 
458
              <Hsp_align-len>29</Hsp_align-len>
 
459
              <Hsp_qseq>DVLYTGRTVRAGMDALVDVGRPSSIQLAV</Hsp_qseq>
 
460
              <Hsp_hseq>DVVIDGRTVSAGPGEIIFIPKGSQIKFSV</Hsp_hseq>
 
461
              <Hsp_midline>DV+  GRTV AG   ++ + + S I+ +V</Hsp_midline>
 
462
            </Hsp>
 
463
          </Hit_hsps>
 
464
        </Hit>
 
465
      </Iteration_hits>
 
466
      <Iteration_stat>
 
467
        <Statistics>
 
468
          <Statistics_db-num>2846</Statistics_db-num>
 
469
          <Statistics_db-len>870878</Statistics_db-len>
 
470
          <Statistics_hsp-len>75</Statistics_hsp-len>
 
471
          <Statistics_eff-space>6.44279e+07</Statistics_eff-space>
 
472
          <Statistics_kappa>0.041</Statistics_kappa>
 
473
          <Statistics_lambda>0.267</Statistics_lambda>
 
474
          <Statistics_entropy>0.14</Statistics_entropy>
 
475
        </Statistics>
 
476
      </Iteration_stat>
 
477
    </Iteration>
 
478
    <Iteration>
 
479
      <Iteration_iter-num>2</Iteration_iter-num>
 
480
      <Iteration_hits>
 
481
        <Hit>
 
482
          <Hit_num>1</Hit_num>
 
483
          <Hit_id>gi|16411294|emb|CAC99918.1|</Hit_id>
 
484
          <Hit_def>pyrR [Listeria monocytogenes]</Hit_def>
 
485
          <Hit_accession>CAC99918</Hit_accession>
 
486
          <Hit_len>183</Hit_len>
 
487
          <Hit_hsps>
 
488
            <Hsp>
 
489
              <Hsp_num>1</Hsp_num>
 
490
              <Hsp_bit-score>260.954</Hsp_bit-score>
 
491
              <Hsp_score>666</Hsp_score>
 
492
              <Hsp_evalue>1.96714e-71</Hsp_evalue>
 
493
              <Hsp_query-from>1</Hsp_query-from>
 
494
              <Hsp_query-to>171</Hsp_query-to>
 
495
              <Hsp_hit-from>1</Hsp_hit-from>
 
496
              <Hsp_hit-to>172</Hsp_hit-to>
 
497
              <Hsp_query-frame>1</Hsp_query-frame>
 
498
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
499
              <Hsp_identity>117</Hsp_identity>
 
500
              <Hsp_positive>140</Hsp_positive>
 
501
              <Hsp_gaps>1</Hsp_gaps>
 
502
              <Hsp_align-len>172</Hsp_align-len>
 
503
              <Hsp_qseq>MNQKAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS-KKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ</Hsp_qseq>
 
504
              <Hsp_hseq>MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDH</Hsp_hseq>
 
505
              <Hsp_midline>M ++ V++DE AI+RALTR+++E+IERNKG  N  LVGIKTRGIYLA+RL +RI +IEG  V VG+IDITLYRDDLS K     EP V G +IP DI  +KV+LVDDVLYTGRTVRA MDAL+DVGRP+ I LAVL DRGHRELPIRADY+GKNIPTS +E+V V+L +VD </Hsp_midline>
 
506
            </Hsp>
 
507
          </Hit_hsps>
 
508
        </Hit>
 
509
        <Hit>
 
510
          <Hit_num>2</Hit_num>
 
511
          <Hit_id>gi|16409584|emb|CAD00746.1|</Hit_id>
 
512
          <Hit_def>fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria monocytogenes]</Hit_def>
 
513
          <Hit_accession>CAD00746</Hit_accession>
 
514
          <Hit_len>648</Hit_len>
 
515
          <Hit_hsps>
 
516
            <Hsp>
 
517
              <Hsp_num>1</Hsp_num>
 
518
              <Hsp_bit-score>196.241</Hsp_bit-score>
 
519
              <Hsp_score>498</Hsp_score>
 
520
              <Hsp_evalue>5.16352e-52</Hsp_evalue>
 
521
              <Hsp_query-from>4</Hsp_query-from>
 
522
              <Hsp_query-to>155</Hsp_query-to>
 
523
              <Hsp_hit-from>475</Hsp_hit-from>
 
524
              <Hsp_hit-to>617</Hsp_hit-to>
 
525
              <Hsp_query-frame>1</Hsp_query-frame>
 
526
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
527
              <Hsp_identity>32</Hsp_identity>
 
528
              <Hsp_positive>78</Hsp_positive>
 
529
              <Hsp_gaps>11</Hsp_gaps>
 
530
              <Hsp_align-len>153</Hsp_align-len>
 
531
              <Hsp_qseq>KAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDR-GHRELPIRADYIGKNIP</Hsp_qseq>
 
532
              <Hsp_hseq>QKVLISEDELQEKIRELGRELTTEYEG-RNPLVVGVLKGATPFMTDLLKRVDTY----LEMDFMDVSSYGN--GTVSSGEVKIIK--DLNASVEGRDVLVIEDIIDSGRTLSYLVD-LIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVP</Hsp_hseq>
 
533
              <Hsp_midline>+ V++ E  ++  +  +  E+    +G  N ++VG+          L +R++      + +  +D++ Y +     +S +  ++K  D+   +  + V++++D++ +GRT+   +D L+   +  S++L  L+D+   R + I ADY+G  +P</Hsp_midline>
 
534
            </Hsp>
 
535
          </Hit_hsps>
 
536
        </Hit>
 
537
        <Hit>
 
538
          <Hit_num>3</Hit_num>
 
539
          <Hit_id>gi|16411285|emb|CAC99909.1|</Hit_id>
 
540
          <Hit_def>pyrE [Listeria monocytogenes]</Hit_def>
 
541
          <Hit_accession>CAC99909</Hit_accession>
 
542
          <Hit_len>209</Hit_len>
 
543
          <Hit_hsps>
 
544
            <Hsp>
 
545
              <Hsp_num>1</Hsp_num>
 
546
              <Hsp_bit-score>30.2198</Hsp_bit-score>
 
547
              <Hsp_score>67</Hsp_score>
 
548
              <Hsp_evalue>0.0528281</Hsp_evalue>
 
549
              <Hsp_query-from>33</Hsp_query-from>
 
550
              <Hsp_query-to>125</Hsp_query-to>
 
551
              <Hsp_hit-from>39</Hsp_hit-from>
 
552
              <Hsp_hit-to>142</Hsp_hit-to>
 
553
              <Hsp_query-frame>1</Hsp_query-frame>
 
554
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
555
              <Hsp_identity>31</Hsp_identity>
 
556
              <Hsp_positive>51</Hsp_positive>
 
557
              <Hsp_gaps>33</Hsp_gaps>
 
558
              <Hsp_align-len>115</Hsp_align-len>
 
559
              <Hsp_qseq>NCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSN-----------DEPLV----------KGADIPVDIT-DQKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
 
560
              <Hsp_hseq>NRLTLGFPKVRQFIAKSLAEKIKQ------TFGEIDVVA-----GTATAGIPHAAWVSDLLDLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAG</Hsp_hseq>
 
561
              <Hsp_midline>N + +G      ++AK LAE+I+Q      T GEID+          T+            D P+V          KG  I   I+  QKV++++D++ TG +    ++AL + G</Hsp_midline>
 
562
            </Hsp>
 
563
          </Hit_hsps>
 
564
        </Hit>
 
565
        <Hit>
 
566
          <Hit_num>4</Hit_num>
 
567
          <Hit_id>gi|16412026|emb|CAD00616.1|</Hit_id>
 
568
          <Hit_def>upp [Listeria monocytogenes]</Hit_def>
 
569
          <Hit_accession>CAD00616</Hit_accession>
 
570
          <Hit_len>209</Hit_len>
 
571
          <Hit_hsps>
 
572
            <Hsp>
 
573
              <Hsp_num>1</Hsp_num>
 
574
              <Hsp_bit-score>29.0642</Hsp_bit-score>
 
575
              <Hsp_score>64</Hsp_score>
 
576
              <Hsp_evalue>0.115741</Hsp_evalue>
 
577
              <Hsp_query-from>69</Hsp_query-from>
 
578
              <Hsp_query-to>136</Hsp_query-to>
 
579
              <Hsp_hit-from>100</Hsp_hit-from>
 
580
              <Hsp_hit-to>161</Hsp_hit-to>
 
581
              <Hsp_query-frame>1</Hsp_query-frame>
 
582
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
583
              <Hsp_identity>19</Hsp_identity>
 
584
              <Hsp_positive>32</Hsp_positive>
 
585
              <Hsp_gaps>6</Hsp_gaps>
 
586
              <Hsp_align-len>68</Hsp_align-len>
 
587
              <Hsp_qseq>ITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLV</Hsp_qseq>
 
588
              <Hsp_hseq>VGLYRDH-----DTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRG-ARNMKFMCLV</Hsp_hseq>
 
589
              <Hsp_midline>+ LYRD         EP+     +P D+ ++  I+VD +L TG +    +D L   G   +++   LV</Hsp_midline>
 
590
            </Hsp>
 
591
          </Hit_hsps>
 
592
        </Hit>
 
593
        <Hit>
 
594
          <Hit_num>5</Hit_num>
 
595
          <Hit_id>gi|16409885|emb|CAC98588.1|</Hit_id>
 
596
          <Hit_def>prs [Listeria monocytogenes]</Hit_def>
 
597
          <Hit_accession>CAC98588</Hit_accession>
 
598
          <Hit_len>311</Hit_len>
 
599
          <Hit_hsps>
 
600
            <Hsp>
 
601
              <Hsp_num>1</Hsp_num>
 
602
              <Hsp_bit-score>29.0642</Hsp_bit-score>
 
603
              <Hsp_score>64</Hsp_score>
 
604
              <Hsp_evalue>0.126867</Hsp_evalue>
 
605
              <Hsp_query-from>95</Hsp_query-from>
 
606
              <Hsp_query-to>134</Hsp_query-to>
 
607
              <Hsp_hit-from>209</Hsp_hit-from>
 
608
              <Hsp_hit-to>248</Hsp_hit-to>
 
609
              <Hsp_query-frame>1</Hsp_query-frame>
 
610
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
611
              <Hsp_identity>12</Hsp_identity>
 
612
              <Hsp_positive>19</Hsp_positive>
 
613
              <Hsp_align-len>40</Hsp_align-len>
 
614
              <Hsp_qseq>DITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAV</Hsp_qseq>
 
615
              <Hsp_hseq>DVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACAT</Hsp_hseq>
 
616
              <Hsp_midline>D+  +  I+VDD++ TG       D L++ G    I  A </Hsp_midline>
 
617
            </Hsp>
 
618
          </Hit_hsps>
 
619
        </Hit>
 
620
        <Hit>
 
621
          <Hit_num>6</Hit_num>
 
622
          <Hit_id>gi|16409989|emb|CAC98678.1|</Hit_id>
 
623
          <Hit_def>lmo0600 [Listeria monocytogenes]</Hit_def>
 
624
          <Hit_accession>CAC98678</Hit_accession>
 
625
          <Hit_len>196</Hit_len>
 
626
          <Hit_hsps>
 
627
            <Hsp>
 
628
              <Hsp_num>1</Hsp_num>
 
629
              <Hsp_bit-score>26.7531</Hsp_bit-score>
 
630
              <Hsp_score>58</Hsp_score>
 
631
              <Hsp_evalue>0.555562</Hsp_evalue>
 
632
              <Hsp_query-from>123</Hsp_query-from>
 
633
              <Hsp_query-to>149</Hsp_query-to>
 
634
              <Hsp_hit-from>49</Hsp_hit-from>
 
635
              <Hsp_hit-to>75</Hsp_hit-to>
 
636
              <Hsp_query-frame>1</Hsp_query-frame>
 
637
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
638
              <Hsp_identity>11</Hsp_identity>
 
639
              <Hsp_positive>16</Hsp_positive>
 
640
              <Hsp_align-len>27</Hsp_align-len>
 
641
              <Hsp_qseq>DVGRPSSIQLAVLVDRGHRELPIRADY</Hsp_qseq>
 
642
              <Hsp_hseq>DLGKPEEIAADIISERGIREEPTEMDY</Hsp_hseq>
 
643
              <Hsp_midline>D+G+P  I   ++ +RG RE P   DY</Hsp_midline>
 
644
            </Hsp>
 
645
          </Hit_hsps>
 
646
        </Hit>
 
647
        <Hit>
 
648
          <Hit_num>7</Hit_num>
 
649
          <Hit_id>gi|16411222|emb|CAC99846.1|</Hit_id>
 
650
          <Hit_def>glutamine phosphoribosylpyrophosphate amidotransferase [Listeria monocytogenes]</Hit_def>
 
651
          <Hit_accession>CAC99846</Hit_accession>
 
652
          <Hit_len>475</Hit_len>
 
653
          <Hit_hsps>
 
654
            <Hsp>
 
655
              <Hsp_num>1</Hsp_num>
 
656
              <Hsp_bit-score>26.3679</Hsp_bit-score>
 
657
              <Hsp_score>57</Hsp_score>
 
658
              <Hsp_evalue>0.678735</Hsp_evalue>
 
659
              <Hsp_query-from>96</Hsp_query-from>
 
660
              <Hsp_query-to>132</Hsp_query-to>
 
661
              <Hsp_hit-from>346</Hsp_hit-from>
 
662
              <Hsp_hit-to>381</Hsp_hit-to>
 
663
              <Hsp_query-frame>1</Hsp_query-frame>
 
664
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
665
              <Hsp_identity>7</Hsp_identity>
 
666
              <Hsp_positive>20</Hsp_positive>
 
667
              <Hsp_gaps>1</Hsp_gaps>
 
668
              <Hsp_align-len>37</Hsp_align-len>
 
669
              <Hsp_qseq>ITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQL</Hsp_qseq>
 
670
              <Hsp_hseq>VEGKRVVMIDDSIVRGTTSKRIVQLLREAG-AAEVHV</Hsp_hseq>
 
671
              <Hsp_midline>+  ++V+++DD +  G T +  +  L + G  + + +</Hsp_midline>
 
672
            </Hsp>
 
673
          </Hit_hsps>
 
674
        </Hit>
 
675
        <Hit>
 
676
          <Hit_num>8</Hit_num>
 
677
          <Hit_id>gi|16409865|emb|CAC98568.1|</Hit_id>
 
678
          <Hit_def>lmo0489 [Listeria monocytogenes]</Hit_def>
 
679
          <Hit_accession>CAC98568</Hit_accession>
 
680
          <Hit_len>664</Hit_len>
 
681
          <Hit_hsps>
 
682
            <Hsp>
 
683
              <Hsp_num>1</Hsp_num>
 
684
              <Hsp_bit-score>25.5975</Hsp_bit-score>
 
685
              <Hsp_score>55</Hsp_score>
 
686
              <Hsp_evalue>1.22738</Hsp_evalue>
 
687
              <Hsp_query-from>112</Hsp_query-from>
 
688
              <Hsp_query-to>157</Hsp_query-to>
 
689
              <Hsp_hit-from>612</Hsp_hit-from>
 
690
              <Hsp_hit-to>657</Hsp_hit-to>
 
691
              <Hsp_query-frame>1</Hsp_query-frame>
 
692
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
693
              <Hsp_identity>11</Hsp_identity>
 
694
              <Hsp_positive>19</Hsp_positive>
 
695
              <Hsp_align-len>46</Hsp_align-len>
 
696
              <Hsp_qseq>RTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTS</Hsp_qseq>
 
697
              <Hsp_hseq>RPERPLMEELAAYGKEKQIEIVNIGDSAATRKILEGVREGRNILTT</Hsp_hseq>
 
698
              <Hsp_midline>R  R  M+ L   G+   I++  + D       +     G+NI T+</Hsp_midline>
 
699
            </Hsp>
 
700
          </Hit_hsps>
 
701
        </Hit>
 
702
        <Hit>
 
703
          <Hit_num>9</Hit_num>
 
704
          <Hit_id>gi|16411665|emb|CAD00273.1|</Hit_id>
 
705
          <Hit_def>lmo2195 [Listeria monocytogenes]</Hit_def>
 
706
          <Hit_accession>CAD00273</Hit_accession>
 
707
          <Hit_len>309</Hit_len>
 
708
          <Hit_hsps>
 
709
            <Hsp>
 
710
              <Hsp_num>1</Hsp_num>
 
711
              <Hsp_bit-score>25.5975</Hsp_bit-score>
 
712
              <Hsp_score>55</Hsp_score>
 
713
              <Hsp_evalue>1.25849</Hsp_evalue>
 
714
              <Hsp_query-from>76</Hsp_query-from>
 
715
              <Hsp_query-to>109</Hsp_query-to>
 
716
              <Hsp_hit-from>262</Hsp_hit-from>
 
717
              <Hsp_hit-to>295</Hsp_hit-to>
 
718
              <Hsp_query-frame>1</Hsp_query-frame>
 
719
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
720
              <Hsp_identity>13</Hsp_identity>
 
721
              <Hsp_positive>19</Hsp_positive>
 
722
              <Hsp_align-len>34</Hsp_align-len>
 
723
              <Hsp_qseq>LSKKTSNDEPLVKGADIPVDITDQKVILVDDVLY</Hsp_qseq>
 
724
              <Hsp_hseq>VSSIQTNDYPVIMGTTILFAVMLVFVILVVDILY</Hsp_hseq>
 
725
              <Hsp_midline>+S   +ND P++ G  I   +    VILV D+LY</Hsp_midline>
 
726
            </Hsp>
 
727
          </Hit_hsps>
 
728
        </Hit>
 
729
        <Hit>
 
730
          <Hit_num>10</Hit_num>
 
731
          <Hit_id>gi|16409905|emb|CAC98608.1|</Hit_id>
 
732
          <Hit_def>lmo0529 [Listeria monocytogenes]</Hit_def>
 
733
          <Hit_accession>CAC98608</Hit_accession>
 
734
          <Hit_len>416</Hit_len>
 
735
          <Hit_hsps>
 
736
            <Hsp>
 
737
              <Hsp_num>1</Hsp_num>
 
738
              <Hsp_bit-score>24.8271</Hsp_bit-score>
 
739
              <Hsp_score>53</Hsp_score>
 
740
              <Hsp_evalue>2.18278</Hsp_evalue>
 
741
              <Hsp_query-from>36</Hsp_query-from>
 
742
              <Hsp_query-to>106</Hsp_query-to>
 
743
              <Hsp_hit-from>23</Hsp_hit-from>
 
744
              <Hsp_hit-to>88</Hsp_hit-to>
 
745
              <Hsp_query-frame>1</Hsp_query-frame>
 
746
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
747
              <Hsp_identity>16</Hsp_identity>
 
748
              <Hsp_positive>31</Hsp_positive>
 
749
              <Hsp_gaps>5</Hsp_gaps>
 
750
              <Hsp_align-len>71</Hsp_align-len>
 
751
              <Hsp_qseq>LVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDD</Hsp_qseq>
 
752
              <Hsp_hseq>IVLIVAGYVYYLKNEARKVPEI---PVEVPFVSVMVPAHNEGKVIVKTVESLLAFDYPVD--RYEIIVIND</Hsp_hseq>
 
753
              <Hsp_midline>+V I    +Y  K  A ++ +I   PV V  + + +   +  K        +   D PVD    ++I+++D</Hsp_midline>
 
754
            </Hsp>
 
755
          </Hit_hsps>
 
756
        </Hit>
 
757
        <Hit>
 
758
          <Hit_num>11</Hit_num>
 
759
          <Hit_id>gi|16410603|emb|CAC99265.1|</Hit_id>
 
760
          <Hit_def>lmo1187 [Listeria monocytogenes]</Hit_def>
 
761
          <Hit_accession>CAC99265</Hit_accession>
 
762
          <Hit_len>147</Hit_len>
 
763
          <Hit_hsps>
 
764
            <Hsp>
 
765
              <Hsp_num>1</Hsp_num>
 
766
              <Hsp_bit-score>24.4419</Hsp_bit-score>
 
767
              <Hsp_score>52</Hsp_score>
 
768
              <Hsp_evalue>3.07312</Hsp_evalue>
 
769
              <Hsp_query-from>96</Hsp_query-from>
 
770
              <Hsp_query-to>134</Hsp_query-to>
 
771
              <Hsp_hit-from>97</Hsp_hit-from>
 
772
              <Hsp_hit-to>130</Hsp_hit-to>
 
773
              <Hsp_query-frame>1</Hsp_query-frame>
 
774
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
775
              <Hsp_identity>11</Hsp_identity>
 
776
              <Hsp_positive>21</Hsp_positive>
 
777
              <Hsp_gaps>5</Hsp_gaps>
 
778
              <Hsp_align-len>39</Hsp_align-len>
 
779
              <Hsp_qseq>ITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAV</Hsp_qseq>
 
780
              <Hsp_hseq>IEGRLDVVID-----GRTVSAGPGEIIFIPKGSQIKFSV</Hsp_hseq>
 
781
              <Hsp_midline>I  +  +++D     GRTV AG   ++ + + S I+ +V</Hsp_midline>
 
782
            </Hsp>
 
783
          </Hit_hsps>
 
784
        </Hit>
 
785
        <Hit>
 
786
          <Hit_num>12</Hit_num>
 
787
          <Hit_id>gi|16410224|emb|CAC98913.1|</Hit_id>
 
788
          <Hit_def>putative peptidoglycan bound protein (LPXTG motif) [Listeria monocytogenes]</Hit_def>
 
789
          <Hit_accession>CAC98913</Hit_accession>
 
790
          <Hit_len>334</Hit_len>
 
791
          <Hit_hsps>
 
792
            <Hsp>
 
793
              <Hsp_num>1</Hsp_num>
 
794
              <Hsp_bit-score>24.4419</Hsp_bit-score>
 
795
              <Hsp_score>52</Hsp_score>
 
796
              <Hsp_evalue>3.17742</Hsp_evalue>
 
797
              <Hsp_query-from>80</Hsp_query-from>
 
798
              <Hsp_query-to>125</Hsp_query-to>
 
799
              <Hsp_hit-from>66</Hsp_hit-from>
 
800
              <Hsp_hit-to>104</Hsp_hit-to>
 
801
              <Hsp_query-frame>1</Hsp_query-frame>
 
802
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
803
              <Hsp_identity>14</Hsp_identity>
 
804
              <Hsp_positive>19</Hsp_positive>
 
805
              <Hsp_gaps>7</Hsp_gaps>
 
806
              <Hsp_align-len>46</Hsp_align-len>
 
807
              <Hsp_qseq>TSNDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVG</Hsp_qseq>
 
808
              <Hsp_hseq>TPKDIPGYKLREIPHNATG-------NITDTGIIVRYIYDKTIDVR</Hsp_hseq>
 
809
              <Hsp_midline>T  D P  K  +IP + T        ++  TG  VR   D  +DV </Hsp_midline>
 
810
            </Hsp>
 
811
          </Hit_hsps>
 
812
        </Hit>
 
813
        <Hit>
 
814
          <Hit_num>13</Hit_num>
 
815
          <Hit_id>gi|16412154|emb|CAD00867.1|</Hit_id>
 
816
          <Hit_def>fus [Listeria monocytogenes]</Hit_def>
 
817
          <Hit_accession>CAD00867</Hit_accession>
 
818
          <Hit_len>695</Hit_len>
 
819
          <Hit_hsps>
 
820
            <Hsp>
 
821
              <Hsp_num>1</Hsp_num>
 
822
              <Hsp_bit-score>24.0567</Hsp_bit-score>
 
823
              <Hsp_score>51</Hsp_score>
 
824
              <Hsp_evalue>3.42521</Hsp_evalue>
 
825
              <Hsp_query-from>110</Hsp_query-from>
 
826
              <Hsp_query-to>148</Hsp_query-to>
 
827
              <Hsp_hit-from>443</Hsp_hit-from>
 
828
              <Hsp_hit-to>472</Hsp_hit-to>
 
829
              <Hsp_query-frame>1</Hsp_query-frame>
 
830
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
831
              <Hsp_identity>14</Hsp_identity>
 
832
              <Hsp_positive>20</Hsp_positive>
 
833
              <Hsp_gaps>9</Hsp_gaps>
 
834
              <Hsp_align-len>39</Hsp_align-len>
 
835
              <Hsp_qseq>TGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRAD</Hsp_qseq>
 
836
              <Hsp_hseq>TGQTLISGMGEL---------HLDILVDRMRREFRVEAN</Hsp_hseq>
 
837
              <Hsp_midline>TG+T+ +GM  L          L +LVDR  RE  + A+</Hsp_midline>
 
838
            </Hsp>
 
839
          </Hit_hsps>
 
840
        </Hit>
 
841
        <Hit>
 
842
          <Hit_num>14</Hit_num>
 
843
          <Hit_id>gi|16409857|emb|CAC98560.1|</Hit_id>
 
844
          <Hit_def>lmo0481 [Listeria monocytogenes]</Hit_def>
 
845
          <Hit_accession>CAC98560</Hit_accession>
 
846
          <Hit_len>566</Hit_len>
 
847
          <Hit_hsps>
 
848
            <Hsp>
 
849
              <Hsp_num>1</Hsp_num>
 
850
              <Hsp_bit-score>24.0567</Hsp_bit-score>
 
851
              <Hsp_score>51</Hsp_score>
 
852
              <Hsp_evalue>3.84962</Hsp_evalue>
 
853
              <Hsp_query-from>8</Hsp_query-from>
 
854
              <Hsp_query-to>68</Hsp_query-to>
 
855
              <Hsp_hit-from>25</Hsp_hit-from>
 
856
              <Hsp_hit-to>92</Hsp_hit-to>
 
857
              <Hsp_query-frame>1</Hsp_query-frame>
 
858
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
859
              <Hsp_identity>14</Hsp_identity>
 
860
              <Hsp_positive>21</Hsp_positive>
 
861
              <Hsp_gaps>7</Hsp_gaps>
 
862
              <Hsp_align-len>68</Hsp_align-len>
 
863
              <Hsp_qseq>LDEQAIRRALTRIAHEMIERNKGMNNCILVG----IKTRGIYLAKRLA---ERIEQIEGNPVTVGEID</Hsp_qseq>
 
864
              <Hsp_hseq>ISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSND</Hsp_hseq>
 
865
              <Hsp_midline>+ EQ        +   +  R  G      VG         +YL +      + I  IEG  +  G  D</Hsp_midline>
 
866
            </Hsp>
 
867
          </Hit_hsps>
 
868
        </Hit>
 
869
        <Hit>
 
870
          <Hit_num>15</Hit_num>
 
871
          <Hit_id>gi|16411180|emb|CAC99804.1|</Hit_id>
 
872
          <Hit_def>lmo1726 [Listeria monocytogenes]</Hit_def>
 
873
          <Hit_accession>CAC99804</Hit_accession>
 
874
          <Hit_len>327</Hit_len>
 
875
          <Hit_hsps>
 
876
            <Hsp>
 
877
              <Hsp_num>1</Hsp_num>
 
878
              <Hsp_bit-score>23.6715</Hsp_bit-score>
 
879
              <Hsp_score>50</Hsp_score>
 
880
              <Hsp_evalue>4.74252</Hsp_evalue>
 
881
              <Hsp_query-from>36</Hsp_query-from>
 
882
              <Hsp_query-to>108</Hsp_query-to>
 
883
              <Hsp_hit-from>190</Hsp_hit-from>
 
884
              <Hsp_hit-to>251</Hsp_hit-to>
 
885
              <Hsp_query-frame>1</Hsp_query-frame>
 
886
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
887
              <Hsp_identity>15</Hsp_identity>
 
888
              <Hsp_positive>29</Hsp_positive>
 
889
              <Hsp_gaps>19</Hsp_gaps>
 
890
              <Hsp_align-len>77</Hsp_align-len>
 
891
              <Hsp_qseq>LVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGAD----IPVDITDQKVILVDDVL</Hsp_qseq>
 
892
              <Hsp_hseq>LFGEPVKATYFATKLPTGVDGLGPIILEYPTFNIT---------------IIQGKNSQSFLPSEIYGQKGTLIVDPL</Hsp_hseq>
 
893
              <Hsp_midline>L G   +  Y A +L   ++ +    +     +IT               +++G +    +P +I  QK  L+ D L</Hsp_midline>
 
894
            </Hsp>
 
895
          </Hit_hsps>
 
896
        </Hit>
 
897
        <Hit>
 
898
          <Hit_num>16</Hit_num>
 
899
          <Hit_id>gi|16411460|emb|CAD00085.1|</Hit_id>
 
900
          <Hit_def>lmo2007 [Listeria monocytogenes]</Hit_def>
 
901
          <Hit_accession>CAD00085</Hit_accession>
 
902
          <Hit_len>485</Hit_len>
 
903
          <Hit_hsps>
 
904
            <Hsp>
 
905
              <Hsp_num>1</Hsp_num>
 
906
              <Hsp_bit-score>22.9011</Hsp_bit-score>
 
907
              <Hsp_score>48</Hsp_score>
 
908
              <Hsp_evalue>7.56717</Hsp_evalue>
 
909
              <Hsp_query-from>47</Hsp_query-from>
 
910
              <Hsp_query-to>114</Hsp_query-to>
 
911
              <Hsp_hit-from>51</Hsp_hit-from>
 
912
              <Hsp_hit-to>137</Hsp_hit-to>
 
913
              <Hsp_query-frame>1</Hsp_query-frame>
 
914
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
915
              <Hsp_identity>19</Hsp_identity>
 
916
              <Hsp_positive>35</Hsp_positive>
 
917
              <Hsp_gaps>19</Hsp_gaps>
 
918
              <Hsp_align-len>87</Hsp_align-len>
 
919
              <Hsp_qseq>AKRLAERIEQIEGNPVTVGEIDITLYRDDLSKK-TSNDEPLV-------------KGADIP----VDITDQKVIL-VDDVLYTGRTV</Hsp_qseq>
 
920
              <Hsp_hseq>MKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGENFDIAYSAAGEFVSYSQKGAFLPLNKYLDKEGKKMKAELNDVLWEGATI</Hsp_hseq>
 
921
              <Hsp_midline> K + +  E+  G  V + +ID   Y   +     S +   +             KGA +P    +D   +K+   ++DVL+ G T+</Hsp_midline>
 
922
            </Hsp>
 
923
          </Hit_hsps>
 
924
        </Hit>
 
925
      </Iteration_hits>
 
926
      <Iteration_stat>
 
927
        <Statistics>
 
928
          <Statistics_db-num>2846</Statistics_db-num>
 
929
          <Statistics_db-len>870878</Statistics_db-len>
 
930
          <Statistics_hsp-len>75</Statistics_hsp-len>
 
931
          <Statistics_eff-space>6.44279e+07</Statistics_eff-space>
 
932
          <Statistics_kappa>0.0475563</Statistics_kappa>
 
933
          <Statistics_lambda>0.267</Statistics_lambda>
 
934
          <Statistics_entropy>0.14</Statistics_entropy>
 
935
        </Statistics>
 
936
      </Iteration_stat>
 
937
      <Iteration_message>CONVERGED</Iteration_message>
 
938
    </Iteration>
 
939
  </BlastOutput_iterations>
 
940
</BlastOutput>
 
941
<?xml version="1.0"?>
 
942
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 
943
<BlastOutput>
 
944
  <BlastOutput_program>blastp</BlastOutput_program>
 
945
  <BlastOutput_version>blastp 2.2.16 [Mar-25-2007]</BlastOutput_version>
 
946
  <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;,  Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
 
947
  <BlastOutput_db>AL591824.faa</BlastOutput_db>
 
948
  <BlastOutput_query-ID>lcl|QUERY</BlastOutput_query-ID>
 
949
  <BlastOutput_query-def>gi|154350371|gb|ABS72450.1| DnaN [Bacillus amyloliquefaciens FZB42]</BlastOutput_query-def>
 
950
  <BlastOutput_query-len>378</BlastOutput_query-len>
 
951
  <BlastOutput_param>
 
952
    <Parameters>
 
953
      <Parameters_matrix>BLOSUM62</Parameters_matrix>
 
954
      <Parameters_expect>10</Parameters_expect>
 
955
      <Parameters_include>0.002</Parameters_include>
 
956
      <Parameters_gap-open>11</Parameters_gap-open>
 
957
      <Parameters_gap-extend>1</Parameters_gap-extend>
 
958
      <Parameters_filter>F</Parameters_filter>
 
959
    </Parameters>
 
960
  </BlastOutput_param>
 
961
  <BlastOutput_iterations>
 
962
    <Iteration>
 
963
      <Iteration_iter-num>1</Iteration_iter-num>
 
964
      <Iteration_hits>
 
965
        <Hit>
 
966
          <Hit_num>1</Hit_num>
 
967
          <Hit_id>gi|16409361|emb|CAC98217.1|</Hit_id>
 
968
          <Hit_def>DNA polymerase III, beta chain [Listeria monocytogenes]</Hit_def>
 
969
          <Hit_accession>CAC98217</Hit_accession>
 
970
          <Hit_len>381</Hit_len>
 
971
          <Hit_hsps>
 
972
            <Hsp>
 
973
              <Hsp_num>1</Hsp_num>
 
974
              <Hsp_bit-score>420.239</Hsp_bit-score>
 
975
              <Hsp_score>1079</Hsp_score>
 
976
              <Hsp_evalue>5.57178e-119</Hsp_evalue>
 
977
              <Hsp_query-from>1</Hsp_query-from>
 
978
              <Hsp_query-to>378</Hsp_query-to>
 
979
              <Hsp_hit-from>1</Hsp_hit-from>
 
980
              <Hsp_hit-to>381</Hsp_hit-to>
 
981
              <Hsp_query-frame>1</Hsp_query-frame>
 
982
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
983
              <Hsp_identity>221</Hsp_identity>
 
984
              <Hsp_positive>293</Hsp_positive>
 
985
              <Hsp_gaps>3</Hsp_gaps>
 
986
              <Hsp_align-len>381</Hsp_align-len>
 
987
              <Hsp_qseq>MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKEDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKVENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGADIRISFTGAMRPFLIR---TPNDETIVQLILPVRTY</Hsp_qseq>
 
988
              <Hsp_hseq>MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNYQTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY</Hsp_hseq>
 
989
              <Hsp_midline>MKF I++DRLV++V +V +A+S+RTTIPILTGIKIV +DEGV+ TGSDSDISIE+FIP  ++D+ IV ++  G IVLQ+++F +IV++LP   VEIEV + Y T I SG+A F LNGLD  EYP LP++ +   I+IP ++LKN++RQTVFAVSA E RP+LTGVNW ++  +L   ATDSHRLALR+  L+   D  YN+VIPGKSL+EL+K+LDD  E +++ +   Q+LFK K++LF+SRLL+G+YPDT+ LIP ++K+E+V+N+K FLQAIDRASLLARE RNNV+KL       +E+SSNSPE+G V E V +    GEE+ ISF+ KYMMDAL+  EG DI+ISF+G MRPF++R     N   I+QLI PVRTY</Hsp_midline>
 
990
            </Hsp>
 
991
          </Hit_hsps>
 
992
        </Hit>
 
993
        <Hit>
 
994
          <Hit_num>2</Hit_num>
 
995
          <Hit_id>gi|16409959|emb|CAC98662.1|</Hit_id>
 
996
          <Hit_def>lmo0583 [Listeria monocytogenes]</Hit_def>
 
997
          <Hit_accession>CAC98662</Hit_accession>
 
998
          <Hit_len>776</Hit_len>
 
999
          <Hit_hsps>
 
1000
            <Hsp>
 
1001
              <Hsp_num>1</Hsp_num>
 
1002
              <Hsp_bit-score>32.7278</Hsp_bit-score>
 
1003
              <Hsp_score>73</Hsp_score>
 
1004
              <Hsp_evalue>0.0242028</Hsp_evalue>
 
1005
              <Hsp_query-from>63</Hsp_query-from>
 
1006
              <Hsp_query-to>181</Hsp_query-to>
 
1007
              <Hsp_hit-from>304</Hsp_hit-from>
 
1008
              <Hsp_hit-to>432</Hsp_hit-to>
 
1009
              <Hsp_query-frame>1</Hsp_query-frame>
 
1010
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1011
              <Hsp_identity>31</Hsp_identity>
 
1012
              <Hsp_positive>52</Hsp_positive>
 
1013
              <Hsp_gaps>10</Hsp_gaps>
 
1014
              <Hsp_align-len>129</Hsp_align-len>
 
1015
              <Hsp_qseq>DKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI--------IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNL--IRQTVFAVSASETRPILTGVNWKVENGELLCTATDS</Hsp_qseq>
 
1016
              <Hsp_hseq>DDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRVNREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSS</Hsp_hseq>
 
1017
              <Hsp_midline>D E++ ID      L  R F++ + +   A   +EV+ +  T+         R  K    + G    E     QI     + IPT+L  N   ++  +F     + R I+  V+W+ E G+     T S</Hsp_midline>
 
1018
            </Hsp>
 
1019
          </Hit_hsps>
 
1020
        </Hit>
 
1021
        <Hit>
 
1022
          <Hit_num>3</Hit_num>
 
1023
          <Hit_id>gi|16410942|emb|CAC99591.1|</Hit_id>
 
1024
          <Hit_def>lmo1513 [Listeria monocytogenes]</Hit_def>
 
1025
          <Hit_accession>CAC99591</Hit_accession>
 
1026
          <Hit_len>382</Hit_len>
 
1027
          <Hit_hsps>
 
1028
            <Hsp>
 
1029
              <Hsp_num>1</Hsp_num>
 
1030
              <Hsp_bit-score>28.8758</Hsp_bit-score>
 
1031
              <Hsp_score>63</Hsp_score>
 
1032
              <Hsp_evalue>0.340848</Hsp_evalue>
 
1033
              <Hsp_query-from>96</Hsp_query-from>
 
1034
              <Hsp_query-to>126</Hsp_query-to>
 
1035
              <Hsp_hit-from>266</Hsp_hit-from>
 
1036
              <Hsp_hit-to>296</Hsp_hit-to>
 
1037
              <Hsp_query-frame>1</Hsp_query-frame>
 
1038
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1039
              <Hsp_identity>12</Hsp_identity>
 
1040
              <Hsp_positive>19</Hsp_positive>
 
1041
              <Hsp_align-len>31</Hsp_align-len>
 
1042
              <Hsp_qseq>IEVQNQYLTIIRSGKAEFNLNGLDADEYPHL</Hsp_qseq>
 
1043
              <Hsp_hseq>ISFKKRMAEIWRSAELDFEVNGLEADTLPHV</Hsp_hseq>
 
1044
              <Hsp_midline>I  + +   I RS + +F +NGL+AD  PH+</Hsp_midline>
 
1045
            </Hsp>
 
1046
          </Hit_hsps>
 
1047
        </Hit>
 
1048
        <Hit>
 
1049
          <Hit_num>4</Hit_num>
 
1050
          <Hit_id>gi|16409922|emb|CAC98625.1|</Hit_id>
 
1051
          <Hit_def>lmo0546 [Listeria monocytogenes]</Hit_def>
 
1052
          <Hit_accession>CAC98625</Hit_accession>
 
1053
          <Hit_len>416</Hit_len>
 
1054
          <Hit_hsps>
 
1055
            <Hsp>
 
1056
              <Hsp_num>1</Hsp_num>
 
1057
              <Hsp_bit-score>28.4906</Hsp_bit-score>
 
1058
              <Hsp_score>62</Hsp_score>
 
1059
              <Hsp_evalue>0.513003</Hsp_evalue>
 
1060
              <Hsp_query-from>270</Hsp_query-from>
 
1061
              <Hsp_query-to>319</Hsp_query-to>
 
1062
              <Hsp_hit-from>155</Hsp_hit-from>
 
1063
              <Hsp_hit-to>203</Hsp_hit-to>
 
1064
              <Hsp_query-frame>1</Hsp_query-frame>
 
1065
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1066
              <Hsp_identity>15</Hsp_identity>
 
1067
              <Hsp_positive>29</Hsp_positive>
 
1068
              <Hsp_gaps>1</Hsp_gaps>
 
1069
              <Hsp_align-len>50</Hsp_align-len>
 
1070
              <Hsp_qseq>EFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLAD</Hsp_qseq>
 
1071
              <Hsp_hseq>EFSKSMGMEVLVAGKGKNNKLKISANP-DSCQVEADGKNMASHMLAAFQD</Hsp_hseq>
 
1072
              <Hsp_midline>EF +++    L+A +G+NN +K+SA P DS ++ ++   +   + A   D</Hsp_midline>
 
1073
            </Hsp>
 
1074
          </Hit_hsps>
 
1075
        </Hit>
 
1076
        <Hit>
 
1077
          <Hit_num>5</Hit_num>
 
1078
          <Hit_id>gi|16411998|emb|CAD00588.1|</Hit_id>
 
1079
          <Hit_def>translocase binding subunit (ATPase) [Listeria monocytogenes]</Hit_def>
 
1080
          <Hit_accession>CAD00588</Hit_accession>
 
1081
          <Hit_len>837</Hit_len>
 
1082
          <Hit_hsps>
 
1083
            <Hsp>
 
1084
              <Hsp_num>1</Hsp_num>
 
1085
              <Hsp_bit-score>26.5646</Hsp_bit-score>
 
1086
              <Hsp_score>57</Hsp_score>
 
1087
              <Hsp_evalue>1.85422</Hsp_evalue>
 
1088
              <Hsp_query-from>63</Hsp_query-from>
 
1089
              <Hsp_query-to>140</Hsp_query-to>
 
1090
              <Hsp_hit-from>310</Hsp_hit-from>
 
1091
              <Hsp_hit-to>395</Hsp_hit-to>
 
1092
              <Hsp_query-frame>1</Hsp_query-frame>
 
1093
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1094
              <Hsp_identity>21</Hsp_identity>
 
1095
              <Hsp_positive>36</Hsp_positive>
 
1096
              <Hsp_gaps>8</Hsp_gaps>
 
1097
              <Hsp_align-len>86</Hsp_align-len>
 
1098
              <Hsp_qseq>DKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI--------IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTD</Hsp_qseq>
 
1099
              <Hsp_hseq>DDEVLIVDQFTGRIMKGRRFSEGLHQALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEIPTN</Hsp_hseq>
 
1100
              <Hsp_midline>D E++ +DQ    +++ R FSE + +   A   + +QN+  T+         R  K    + G    E      I     I+IPT+</Hsp_midline>
 
1101
            </Hsp>
 
1102
          </Hit_hsps>
 
1103
        </Hit>
 
1104
        <Hit>
 
1105
          <Hit_num>6</Hit_num>
 
1106
          <Hit_id>gi|16411204|emb|CAC99828.1|</Hit_id>
 
1107
          <Hit_def>lmo1750 [Listeria monocytogenes]</Hit_def>
 
1108
          <Hit_accession>CAC99828</Hit_accession>
 
1109
          <Hit_len>184</Hit_len>
 
1110
          <Hit_hsps>
 
1111
            <Hsp>
 
1112
              <Hsp_num>1</Hsp_num>
 
1113
              <Hsp_bit-score>26.5646</Hsp_bit-score>
 
1114
              <Hsp_score>57</Hsp_score>
 
1115
              <Hsp_evalue>2.11904</Hsp_evalue>
 
1116
              <Hsp_query-from>308</Hsp_query-from>
 
1117
              <Hsp_query-to>340</Hsp_query-to>
 
1118
              <Hsp_hit-from>49</Hsp_hit-from>
 
1119
              <Hsp_hit-to>80</Hsp_hit-to>
 
1120
              <Hsp_query-frame>1</Hsp_query-frame>
 
1121
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1122
              <Hsp_identity>13</Hsp_identity>
 
1123
              <Hsp_positive>22</Hsp_positive>
 
1124
              <Hsp_gaps>1</Hsp_gaps>
 
1125
              <Hsp_align-len>33</Hsp_align-len>
 
1126
              <Hsp_qseq>EIGKVVEAVLADQIDGEELNISFSPKYMMDALK</Hsp_qseq>
 
1127
              <Hsp_hseq>EVLRRLEEYFSDKSD-QGLNLSSFPKYMMETVK</Hsp_hseq>
 
1128
              <Hsp_midline>E+ + +E   +D+ D + LN+S  PKYMM+ +K</Hsp_midline>
 
1129
            </Hsp>
 
1130
          </Hit_hsps>
 
1131
        </Hit>
 
1132
        <Hit>
 
1133
          <Hit_num>7</Hit_num>
 
1134
          <Hit_id>gi|16410207|emb|CAC98896.1|</Hit_id>
 
1135
          <Hit_def>lmo0818 [Listeria monocytogenes]</Hit_def>
 
1136
          <Hit_accession>CAC98896</Hit_accession>
 
1137
          <Hit_len>876</Hit_len>
 
1138
          <Hit_hsps>
 
1139
            <Hsp>
 
1140
              <Hsp_num>1</Hsp_num>
 
1141
              <Hsp_bit-score>25.7942</Hsp_bit-score>
 
1142
              <Hsp_score>55</Hsp_score>
 
1143
              <Hsp_evalue>2.98338</Hsp_evalue>
 
1144
              <Hsp_query-from>106</Hsp_query-from>
 
1145
              <Hsp_query-to>167</Hsp_query-to>
 
1146
              <Hsp_hit-from>28</Hsp_hit-from>
 
1147
              <Hsp_hit-to>82</Hsp_hit-to>
 
1148
              <Hsp_query-frame>1</Hsp_query-frame>
 
1149
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1150
              <Hsp_identity>18</Hsp_identity>
 
1151
              <Hsp_positive>27</Hsp_positive>
 
1152
              <Hsp_gaps>7</Hsp_gaps>
 
1153
              <Hsp_align-len>62</Hsp_align-len>
 
1154
              <Hsp_qseq>IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNW</Hsp_qseq>
 
1155
              <Hsp_hseq>VKQKHAEFGTNEFEEGKKESLLQKIGHHLVEITTIVL-------LFAAAISAYLAITTGYGW</Hsp_hseq>
 
1156
              <Hsp_midline>++   AEF  N  +  +   L Q   HH ++I T +L       +FA + S    I TG  W</Hsp_midline>
 
1157
            </Hsp>
 
1158
          </Hit_hsps>
 
1159
        </Hit>
 
1160
        <Hit>
 
1161
          <Hit_num>8</Hit_num>
 
1162
          <Hit_id>gi|16411261|emb|CAC99885.1|</Hit_id>
 
1163
          <Hit_def>fabG [Listeria monocytogenes]</Hit_def>
 
1164
          <Hit_accession>CAC99885</Hit_accession>
 
1165
          <Hit_len>247</Hit_len>
 
1166
          <Hit_hsps>
 
1167
            <Hsp>
 
1168
              <Hsp_num>1</Hsp_num>
 
1169
              <Hsp_bit-score>25.7942</Hsp_bit-score>
 
1170
              <Hsp_score>55</Hsp_score>
 
1171
              <Hsp_evalue>3.27016</Hsp_evalue>
 
1172
              <Hsp_query-from>276</Hsp_query-from>
 
1173
              <Hsp_query-to>366</Hsp_query-to>
 
1174
              <Hsp_hit-from>20</Hsp_hit-from>
 
1175
              <Hsp_hit-to>106</Hsp_hit-to>
 
1176
              <Hsp_query-frame>1</Hsp_query-frame>
 
1177
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1178
              <Hsp_identity>26</Hsp_identity>
 
1179
              <Hsp_positive>40</Hsp_positive>
 
1180
              <Hsp_gaps>6</Hsp_gaps>
 
1181
              <Hsp_align-len>92</Hsp_align-len>
 
1182
              <Hsp_qseq>DRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGADIRISFTGAMRP-FLIRTPNDE</Hsp_qseq>
 
1183
              <Hsp_hseq>DIAINLAKEGANIFFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFK-----QAIERFGRVDILVNNAGITRDNLLMRMKEDE</Hsp_hseq>
 
1184
              <Hsp_midline>D A  LA+EG N     +  P  + E +    E G  VEA+ A+    E+++  F       A++     DI ++  G  R   L+R   DE</Hsp_midline>
 
1185
            </Hsp>
 
1186
          </Hit_hsps>
 
1187
        </Hit>
 
1188
        <Hit>
 
1189
          <Hit_num>9</Hit_num>
 
1190
          <Hit_id>gi|16410081|emb|CAC98770.1|</Hit_id>
 
1191
          <Hit_def>two-component sensor histidine kinase CheA [Listeria monocytogenes]</Hit_def>
 
1192
          <Hit_accession>CAC98770</Hit_accession>
 
1193
          <Hit_len>618</Hit_len>
 
1194
          <Hit_hsps>
 
1195
            <Hsp>
 
1196
              <Hsp_num>1</Hsp_num>
 
1197
              <Hsp_bit-score>25.7942</Hsp_bit-score>
 
1198
              <Hsp_score>55</Hsp_score>
 
1199
              <Hsp_evalue>3.61454</Hsp_evalue>
 
1200
              <Hsp_query-from>267</Hsp_query-from>
 
1201
              <Hsp_query-to>322</Hsp_query-to>
 
1202
              <Hsp_hit-from>275</Hsp_hit-from>
 
1203
              <Hsp_hit-to>328</Hsp_hit-to>
 
1204
              <Hsp_query-frame>1</Hsp_query-frame>
 
1205
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1206
              <Hsp_identity>14</Hsp_identity>
 
1207
              <Hsp_positive>31</Hsp_positive>
 
1208
              <Hsp_gaps>2</Hsp_gaps>
 
1209
              <Hsp_align-len>56</Hsp_align-len>
 
1210
              <Hsp_qseq>NTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQID</Hsp_qseq>
 
1211
              <Hsp_hseq>NNKELMEHLGRFSSISKEIQNGLLNMRMVPVDS--VFNRFPKMVRTLAKELGKKID</Hsp_hseq>
 
1212
              <Hsp_midline>N KE ++ + R S +++E +N ++ +   P DS  + +  P++ + +   L  +ID</Hsp_midline>
 
1213
            </Hsp>
 
1214
          </Hit_hsps>
 
1215
        </Hit>
 
1216
        <Hit>
 
1217
          <Hit_num>10</Hit_num>
 
1218
          <Hit_id>gi|16410572|emb|CAC99234.1|</Hit_id>
 
1219
          <Hit_def>lmo1156 [Listeria monocytogenes]</Hit_def>
 
1220
          <Hit_accession>CAC99234</Hit_accession>
 
1221
          <Hit_len>606</Hit_len>
 
1222
          <Hit_hsps>
 
1223
            <Hsp>
 
1224
              <Hsp_num>1</Hsp_num>
 
1225
              <Hsp_bit-score>25.409</Hsp_bit-score>
 
1226
              <Hsp_score>54</Hsp_score>
 
1227
              <Hsp_evalue>4.41591</Hsp_evalue>
 
1228
              <Hsp_query-from>65</Hsp_query-from>
 
1229
              <Hsp_query-to>95</Hsp_query-to>
 
1230
              <Hsp_hit-from>440</Hsp_hit-from>
 
1231
              <Hsp_hit-to>470</Hsp_hit-to>
 
1232
              <Hsp_query-frame>1</Hsp_query-frame>
 
1233
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1234
              <Hsp_identity>12</Hsp_identity>
 
1235
              <Hsp_positive>20</Hsp_positive>
 
1236
              <Hsp_align-len>31</Hsp_align-len>
 
1237
              <Hsp_qseq>EIVTIDQPGSIVLQARFFSEIVKKLPMATVE</Hsp_qseq>
 
1238
              <Hsp_hseq>DMVTMIIQSEIGLEDRYLAEDIKKYPLAKVE</Hsp_hseq>
 
1239
              <Hsp_midline>++VT+     I L+ R+ +E +KK P+A VE</Hsp_midline>
 
1240
            </Hsp>
 
1241
          </Hit_hsps>
 
1242
        </Hit>
 
1243
        <Hit>
 
1244
          <Hit_num>11</Hit_num>
 
1245
          <Hit_id>gi|16411268|emb|CAC99892.1|</Hit_id>
 
1246
          <Hit_def>lmo1814 [Listeria monocytogenes]</Hit_def>
 
1247
          <Hit_accession>CAC99892</Hit_accession>
 
1248
          <Hit_len>552</Hit_len>
 
1249
          <Hit_hsps>
 
1250
            <Hsp>
 
1251
              <Hsp_num>1</Hsp_num>
 
1252
              <Hsp_bit-score>24.2534</Hsp_bit-score>
 
1253
              <Hsp_score>51</Hsp_score>
 
1254
              <Hsp_evalue>9.43565</Hsp_evalue>
 
1255
              <Hsp_query-from>211</Hsp_query-from>
 
1256
              <Hsp_query-to>238</Hsp_query-to>
 
1257
              <Hsp_hit-from>495</Hsp_hit-from>
 
1258
              <Hsp_hit-to>522</Hsp_hit-to>
 
1259
              <Hsp_query-frame>1</Hsp_query-frame>
 
1260
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1261
              <Hsp_identity>11</Hsp_identity>
 
1262
              <Hsp_positive>18</Hsp_positive>
 
1263
              <Hsp_align-len>28</Hsp_align-len>
 
1264
              <Hsp_qseq>LSKILDDNQELVDIVITETQVLFKAKNV</Hsp_qseq>
 
1265
              <Hsp_hseq>LEKLLDDDSEIVTIIVGEDSDTTKAETL</Hsp_hseq>
 
1266
              <Hsp_midline>L K+LDD+ E+V I++ E     KA+ +</Hsp_midline>
 
1267
            </Hsp>
 
1268
          </Hit_hsps>
 
1269
        </Hit>
 
1270
      </Iteration_hits>
 
1271
      <Iteration_stat>
 
1272
        <Statistics>
 
1273
          <Statistics_db-num>2846</Statistics_db-num>
 
1274
          <Statistics_db-len>870878</Statistics_db-len>
 
1275
          <Statistics_hsp-len>82</Statistics_hsp-len>
 
1276
          <Statistics_eff-space>1.88702e+08</Statistics_eff-space>
 
1277
          <Statistics_kappa>0.041</Statistics_kappa>
 
1278
          <Statistics_lambda>0.267</Statistics_lambda>
 
1279
          <Statistics_entropy>0.14</Statistics_entropy>
 
1280
        </Statistics>
 
1281
      </Iteration_stat>
 
1282
    </Iteration>
 
1283
    <Iteration>
 
1284
      <Iteration_iter-num>2</Iteration_iter-num>
 
1285
      <Iteration_hits>
 
1286
        <Hit>
 
1287
          <Hit_num>1</Hit_num>
 
1288
          <Hit_id>gi|16409361|emb|CAC98217.1|</Hit_id>
 
1289
          <Hit_def>DNA polymerase III, beta chain [Listeria monocytogenes]</Hit_def>
 
1290
          <Hit_accession>CAC98217</Hit_accession>
 
1291
          <Hit_len>381</Hit_len>
 
1292
          <Hit_hsps>
 
1293
            <Hsp>
 
1294
              <Hsp_num>1</Hsp_num>
 
1295
              <Hsp_bit-score>700.95</Hsp_bit-score>
 
1296
              <Hsp_score>1808</Hsp_score>
 
1297
              <Hsp_evalue>0</Hsp_evalue>
 
1298
              <Hsp_query-from>1</Hsp_query-from>
 
1299
              <Hsp_query-to>378</Hsp_query-to>
 
1300
              <Hsp_hit-from>1</Hsp_hit-from>
 
1301
              <Hsp_hit-to>381</Hsp_hit-to>
 
1302
              <Hsp_query-frame>1</Hsp_query-frame>
 
1303
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1304
              <Hsp_identity>221</Hsp_identity>
 
1305
              <Hsp_positive>293</Hsp_positive>
 
1306
              <Hsp_gaps>3</Hsp_gaps>
 
1307
              <Hsp_align-len>381</Hsp_align-len>
 
1308
              <Hsp_qseq>MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKEDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKVENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGADIRISFTGAMRPFLIR---TPNDETIVQLILPVRTY</Hsp_qseq>
 
1309
              <Hsp_hseq>MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNYQTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY</Hsp_hseq>
 
1310
              <Hsp_midline>MKF I++DRLV++V +V +A+S+RTTIPILTGIKIV +DEGV+ TGSDSDISIE+FIP  ++D+ IV ++  G IVLQ+++F +IV++LP   VEIEV + Y T I SG+A F LNGLD  EYP LP++ +   I+IP ++LKN++RQTVFAVSA E RP+LTGVNW ++  +L   ATDSHRLALR+  L+   D  YN+VIPGKSL+EL+K+LDD  E +++ +   Q+LFK K++LF+SRLL+G+YPDT+ LIP ++K+E+V+N+K FLQAIDRASLLARE RNNV+KL       +E+SSNSPE+G V E V +    GEE+ ISF+ KYMMDAL+  EG DI+ISF+G MRPF++R     N   I+QLI PVRTY</Hsp_midline>
 
1311
            </Hsp>
 
1312
          </Hit_hsps>
 
1313
        </Hit>
 
1314
        <Hit>
 
1315
          <Hit_num>2</Hit_num>
 
1316
          <Hit_id>gi|16409959|emb|CAC98662.1|</Hit_id>
 
1317
          <Hit_def>lmo0583 [Listeria monocytogenes]</Hit_def>
 
1318
          <Hit_accession>CAC98662</Hit_accession>
 
1319
          <Hit_len>776</Hit_len>
 
1320
          <Hit_hsps>
 
1321
            <Hsp>
 
1322
              <Hsp_num>1</Hsp_num>
 
1323
              <Hsp_bit-score>34.9402</Hsp_bit-score>
 
1324
              <Hsp_score>79</Hsp_score>
 
1325
              <Hsp_evalue>0.00513589</Hsp_evalue>
 
1326
              <Hsp_query-from>63</Hsp_query-from>
 
1327
              <Hsp_query-to>181</Hsp_query-to>
 
1328
              <Hsp_hit-from>304</Hsp_hit-from>
 
1329
              <Hsp_hit-to>432</Hsp_hit-to>
 
1330
              <Hsp_query-frame>1</Hsp_query-frame>
 
1331
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1332
              <Hsp_identity>31</Hsp_identity>
 
1333
              <Hsp_positive>52</Hsp_positive>
 
1334
              <Hsp_gaps>10</Hsp_gaps>
 
1335
              <Hsp_align-len>129</Hsp_align-len>
 
1336
              <Hsp_qseq>DKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI--------IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNL--IRQTVFAVSASETRPILTGVNWKVENGELLCTATDS</Hsp_qseq>
 
1337
              <Hsp_hseq>DDEVLIIDPHTGRALPGRRFNDGLHQAIEAKEGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRVNREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSS</Hsp_hseq>
 
1338
              <Hsp_midline>D E++ ID      L  R F++ + +   A   +EV+ +  T+         R  K    + G    E     QI     + IPT+L  N   ++  +F     + R I+  V+W+ E G+     T S</Hsp_midline>
 
1339
            </Hsp>
 
1340
          </Hit_hsps>
 
1341
        </Hit>
 
1342
        <Hit>
 
1343
          <Hit_num>3</Hit_num>
 
1344
          <Hit_id>gi|16411998|emb|CAD00588.1|</Hit_id>
 
1345
          <Hit_def>translocase binding subunit (ATPase) [Listeria monocytogenes]</Hit_def>
 
1346
          <Hit_accession>CAD00588</Hit_accession>
 
1347
          <Hit_len>837</Hit_len>
 
1348
          <Hit_hsps>
 
1349
            <Hsp>
 
1350
              <Hsp_num>1</Hsp_num>
 
1351
              <Hsp_bit-score>34.555</Hsp_bit-score>
 
1352
              <Hsp_score>78</Hsp_score>
 
1353
              <Hsp_evalue>0.00819482</Hsp_evalue>
 
1354
              <Hsp_query-from>60</Hsp_query-from>
 
1355
              <Hsp_query-to>147</Hsp_query-to>
 
1356
              <Hsp_hit-from>308</Hsp_hit-from>
 
1357
              <Hsp_hit-to>400</Hsp_hit-to>
 
1358
              <Hsp_query-frame>1</Hsp_query-frame>
 
1359
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1360
              <Hsp_identity>23</Hsp_identity>
 
1361
              <Hsp_positive>40</Hsp_positive>
 
1362
              <Hsp_gaps>11</Hsp_gaps>
 
1363
              <Hsp_align-len>96</Hsp_align-len>
 
1364
              <Hsp_qseq>EDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATVEIEVQNQ--------YLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIR</Hsp_qseq>
 
1365
              <Hsp_hseq>VQDDEVLI-VDQFTGRIMKGRRFSEGLHQALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEIPTN--KVIIR</Hsp_hseq>
 
1366
              <Hsp_midline>  DD+ ++ +DQ    +++ R FSE + +   A   + +QN+        +    R  K    + G    E      I     I+IPT+  K +IR</Hsp_midline>
 
1367
            </Hsp>
 
1368
          </Hit_hsps>
 
1369
        </Hit>
 
1370
        <Hit>
 
1371
          <Hit_num>4</Hit_num>
 
1372
          <Hit_id>gi|16410192|emb|CAC98881.1|</Hit_id>
 
1373
          <Hit_def>lmo0803 [Listeria monocytogenes]</Hit_def>
 
1374
          <Hit_accession>CAC98881</Hit_accession>
 
1375
          <Hit_len>682</Hit_len>
 
1376
          <Hit_hsps>
 
1377
            <Hsp>
 
1378
              <Hsp_num>1</Hsp_num>
 
1379
              <Hsp_bit-score>27.2362</Hsp_bit-score>
 
1380
              <Hsp_score>59</Hsp_score>
 
1381
              <Hsp_evalue>1.14482</Hsp_evalue>
 
1382
              <Hsp_query-from>53</Hsp_query-from>
 
1383
              <Hsp_query-to>129</Hsp_query-to>
 
1384
              <Hsp_hit-from>406</Hsp_hit-from>
 
1385
              <Hsp_hit-to>490</Hsp_hit-to>
 
1386
              <Hsp_query-frame>1</Hsp_query-frame>
 
1387
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1388
              <Hsp_identity>20</Hsp_identity>
 
1389
              <Hsp_positive>34</Hsp_positive>
 
1390
              <Hsp_gaps>8</Hsp_gaps>
 
1391
              <Hsp_align-len>85</Hsp_align-len>
 
1392
              <Hsp_qseq>IESFI-PKEDDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV------EIEVQNQYLTIIRSGKAEFNLN-GLDADEYPHLPQI</Hsp_qseq>
 
1393
              <Hsp_hseq>IATFILPLLAKSEEVTTEDERAEIATRIRILRNVIRELKEQTLPETKAATDEVIEDYRKRIYDLQQNNSSNRGMDERERAKRLEI</Hsp_hseq>
 
1394
              <Hsp_midline>I +FI P     +E+ T D+   I  + R    ++++L   T+        EV   Y   I   +   + N G+D  E     +I</Hsp_midline>
 
1395
            </Hsp>
 
1396
          </Hit_hsps>
 
1397
        </Hit>
 
1398
        <Hit>
 
1399
          <Hit_num>5</Hit_num>
 
1400
          <Hit_id>gi|16411204|emb|CAC99828.1|</Hit_id>
 
1401
          <Hit_def>lmo1750 [Listeria monocytogenes]</Hit_def>
 
1402
          <Hit_accession>CAC99828</Hit_accession>
 
1403
          <Hit_len>184</Hit_len>
 
1404
          <Hit_hsps>
 
1405
            <Hsp>
 
1406
              <Hsp_num>1</Hsp_num>
 
1407
              <Hsp_bit-score>27.2362</Hsp_bit-score>
 
1408
              <Hsp_score>59</Hsp_score>
 
1409
              <Hsp_evalue>1.15441</Hsp_evalue>
 
1410
              <Hsp_query-from>308</Hsp_query-from>
 
1411
              <Hsp_query-to>340</Hsp_query-to>
 
1412
              <Hsp_hit-from>49</Hsp_hit-from>
 
1413
              <Hsp_hit-to>80</Hsp_hit-to>
 
1414
              <Hsp_query-frame>1</Hsp_query-frame>
 
1415
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1416
              <Hsp_identity>13</Hsp_identity>
 
1417
              <Hsp_positive>22</Hsp_positive>
 
1418
              <Hsp_gaps>1</Hsp_gaps>
 
1419
              <Hsp_align-len>33</Hsp_align-len>
 
1420
              <Hsp_qseq>EIGKVVEAVLADQIDGEELNISFSPKYMMDALK</Hsp_qseq>
 
1421
              <Hsp_hseq>EVLRRLEEYFSDKSD-QGLNLSSFPKYMMETVK</Hsp_hseq>
 
1422
              <Hsp_midline>E+ + +E   +D+ D + LN+S  PKYMM+ +K</Hsp_midline>
 
1423
            </Hsp>
 
1424
          </Hit_hsps>
 
1425
        </Hit>
 
1426
        <Hit>
 
1427
          <Hit_num>6</Hit_num>
 
1428
          <Hit_id>gi|16410635|emb|CAC99297.1|</Hit_id>
 
1429
          <Hit_def>lmo1219 [Listeria monocytogenes]</Hit_def>
 
1430
          <Hit_accession>CAC99297</Hit_accession>
 
1431
          <Hit_len>119</Hit_len>
 
1432
          <Hit_hsps>
 
1433
            <Hsp>
 
1434
              <Hsp_num>1</Hsp_num>
 
1435
              <Hsp_bit-score>27.2362</Hsp_bit-score>
 
1436
              <Hsp_score>59</Hsp_score>
 
1437
              <Hsp_evalue>1.18367</Hsp_evalue>
 
1438
              <Hsp_query-from>150</Hsp_query-from>
 
1439
              <Hsp_query-to>196</Hsp_query-to>
 
1440
              <Hsp_hit-from>72</Hsp_hit-from>
 
1441
              <Hsp_hit-to>118</Hsp_hit-to>
 
1442
              <Hsp_query-frame>1</Hsp_query-frame>
 
1443
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1444
              <Hsp_identity>10</Hsp_identity>
 
1445
              <Hsp_positive>21</Hsp_positive>
 
1446
              <Hsp_align-len>47</Hsp_align-len>
 
1447
              <Hsp_qseq>VFAVSASETRPILTGVNWKVENGELLCTATDSHRLALRKAKLDIPED</Hsp_qseq>
 
1448
              <Hsp_hseq>VTIISTGSSNGFFTGIDWGAAFDYMHSVVADLKRVAIREVAIEKQEE</Hsp_hseq>
 
1449
              <Hsp_midline>V  +S   +    TG++W      +     D  R+A+R+  ++  E+</Hsp_midline>
 
1450
            </Hsp>
 
1451
          </Hit_hsps>
 
1452
        </Hit>
 
1453
        <Hit>
 
1454
          <Hit_num>7</Hit_num>
 
1455
          <Hit_id>gi|16409423|emb|CAC98279.1|</Hit_id>
 
1456
          <Hit_def>lmo0064 [Listeria monocytogenes]</Hit_def>
 
1457
          <Hit_accession>CAC98279</Hit_accession>
 
1458
          <Hit_len>233</Hit_len>
 
1459
          <Hit_hsps>
 
1460
            <Hsp>
 
1461
              <Hsp_num>1</Hsp_num>
 
1462
              <Hsp_bit-score>26.851</Hsp_bit-score>
 
1463
              <Hsp_score>58</Hsp_score>
 
1464
              <Hsp_evalue>1.37549</Hsp_evalue>
 
1465
              <Hsp_query-from>314</Hsp_query-from>
 
1466
              <Hsp_query-to>378</Hsp_query-to>
 
1467
              <Hsp_hit-from>40</Hsp_hit-from>
 
1468
              <Hsp_hit-to>112</Hsp_hit-to>
 
1469
              <Hsp_query-frame>1</Hsp_query-frame>
 
1470
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1471
              <Hsp_identity>16</Hsp_identity>
 
1472
              <Hsp_positive>30</Hsp_positive>
 
1473
              <Hsp_gaps>8</Hsp_gaps>
 
1474
              <Hsp_align-len>73</Hsp_align-len>
 
1475
              <Hsp_qseq>EAVLADQID--------GEELNISFSPKYMMDALKVLEGADIRISFTGAMRPFLIRTPNDETIVQLILPVRTY</Hsp_qseq>
 
1476
              <Hsp_hseq>EDVFAEGFDRLKSKGILNEAGELTDGGGFLIDSLIEYYQSKKYVRMNQLMFAFLEKTPNELLVMIEITPQKEY</Hsp_hseq>
 
1477
              <Hsp_midline>E V A+  D         E   ++    +++D+L     +   +     M  FL +TPN+  ++  I P + Y</Hsp_midline>
 
1478
            </Hsp>
 
1479
          </Hit_hsps>
 
1480
        </Hit>
 
1481
        <Hit>
 
1482
          <Hit_num>8</Hit_num>
 
1483
          <Hit_id>gi|16410481|emb|CAC99157.1|</Hit_id>
 
1484
          <Hit_def>lmo1079 [Listeria monocytogenes]</Hit_def>
 
1485
          <Hit_accession>CAC99157</Hit_accession>
 
1486
          <Hit_len>952</Hit_len>
 
1487
          <Hit_hsps>
 
1488
            <Hsp>
 
1489
              <Hsp_num>1</Hsp_num>
 
1490
              <Hsp_bit-score>26.851</Hsp_bit-score>
 
1491
              <Hsp_score>58</Hsp_score>
 
1492
              <Hsp_evalue>1.45822</Hsp_evalue>
 
1493
              <Hsp_query-from>170</Hsp_query-from>
 
1494
              <Hsp_query-to>237</Hsp_query-to>
 
1495
              <Hsp_hit-from>646</Hsp_hit-from>
 
1496
              <Hsp_hit-to>710</Hsp_hit-to>
 
1497
              <Hsp_query-frame>1</Hsp_query-frame>
 
1498
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1499
              <Hsp_identity>18</Hsp_identity>
 
1500
              <Hsp_positive>32</Hsp_positive>
 
1501
              <Hsp_gaps>11</Hsp_gaps>
 
1502
              <Hsp_align-len>72</Hsp_align-len>
 
1503
              <Hsp_qseq>ENGELLCTAT-DSHRLALRKAKLDIPEDSSYNVVIP---GKSLTELSKILDDNQELVDIVITETQVLFKAKN</Hsp_qseq>
 
1504
              <Hsp_hseq>KEEALSYNAIIDNKDTSKREYKSNIKE-LEFETSIPKVNGKAPAKLTK------DKIEVSNAENSIQFKLKN</Hsp_hseq>
 
1505
              <Hsp_midline>+   L   A  D+   + R+ K +I E   +   IP   GK+  +L+K      + +++   E  + FK KN</Hsp_midline>
 
1506
            </Hsp>
 
1507
          </Hit_hsps>
 
1508
        </Hit>
 
1509
        <Hit>
 
1510
          <Hit_num>9</Hit_num>
 
1511
          <Hit_id>gi|16409922|emb|CAC98625.1|</Hit_id>
 
1512
          <Hit_def>lmo0546 [Listeria monocytogenes]</Hit_def>
 
1513
          <Hit_accession>CAC98625</Hit_accession>
 
1514
          <Hit_len>416</Hit_len>
 
1515
          <Hit_hsps>
 
1516
            <Hsp>
 
1517
              <Hsp_num>1</Hsp_num>
 
1518
              <Hsp_bit-score>26.851</Hsp_bit-score>
 
1519
              <Hsp_score>58</Hsp_score>
 
1520
              <Hsp_evalue>1.47044</Hsp_evalue>
 
1521
              <Hsp_query-from>280</Hsp_query-from>
 
1522
              <Hsp_query-to>300</Hsp_query-to>
 
1523
              <Hsp_hit-from>7</Hsp_hit-from>
 
1524
              <Hsp_hit-to>27</Hsp_hit-to>
 
1525
              <Hsp_query-frame>1</Hsp_query-frame>
 
1526
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1527
              <Hsp_identity>8</Hsp_identity>
 
1528
              <Hsp_positive>12</Hsp_positive>
 
1529
              <Hsp_align-len>21</Hsp_align-len>
 
1530
              <Hsp_qseq>LLAREGRNNVVKLSAKPADSL</Hsp_qseq>
 
1531
              <Hsp_hseq>LLARENENNPIRVGVIGAGQM</Hsp_hseq>
 
1532
              <Hsp_midline>LLARE  NN +++    A  +</Hsp_midline>
 
1533
            </Hsp>
 
1534
          </Hit_hsps>
 
1535
        </Hit>
 
1536
        <Hit>
 
1537
          <Hit_num>10</Hit_num>
 
1538
          <Hit_id>gi|16410942|emb|CAC99591.1|</Hit_id>
 
1539
          <Hit_def>lmo1513 [Listeria monocytogenes]</Hit_def>
 
1540
          <Hit_accession>CAC99591</Hit_accession>
 
1541
          <Hit_len>382</Hit_len>
 
1542
          <Hit_hsps>
 
1543
            <Hsp>
 
1544
              <Hsp_num>1</Hsp_num>
 
1545
              <Hsp_bit-score>26.851</Hsp_bit-score>
 
1546
              <Hsp_score>58</Hsp_score>
 
1547
              <Hsp_evalue>1.59839</Hsp_evalue>
 
1548
              <Hsp_query-from>107</Hsp_query-from>
 
1549
              <Hsp_query-to>126</Hsp_query-to>
 
1550
              <Hsp_hit-from>277</Hsp_hit-from>
 
1551
              <Hsp_hit-to>296</Hsp_hit-to>
 
1552
              <Hsp_query-frame>1</Hsp_query-frame>
 
1553
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1554
              <Hsp_identity>10</Hsp_identity>
 
1555
              <Hsp_positive>15</Hsp_positive>
 
1556
              <Hsp_align-len>20</Hsp_align-len>
 
1557
              <Hsp_qseq>RSGKAEFNLNGLDADEYPHL</Hsp_qseq>
 
1558
              <Hsp_hseq>RSAELDFEVNGLEADTLPHV</Hsp_hseq>
 
1559
              <Hsp_midline>RS + +F +NGL+AD  PH+</Hsp_midline>
 
1560
            </Hsp>
 
1561
          </Hit_hsps>
 
1562
        </Hit>
 
1563
        <Hit>
 
1564
          <Hit_num>11</Hit_num>
 
1565
          <Hit_id>gi|16412324|emb|CAD01037.1|</Hit_id>
 
1566
          <Hit_def>lmo2824 [Listeria monocytogenes]</Hit_def>
 
1567
          <Hit_accession>CAD01037</Hit_accession>
 
1568
          <Hit_len>395</Hit_len>
 
1569
          <Hit_hsps>
 
1570
            <Hsp>
 
1571
              <Hsp_num>1</Hsp_num>
 
1572
              <Hsp_bit-score>26.851</Hsp_bit-score>
 
1573
              <Hsp_score>58</Hsp_score>
 
1574
              <Hsp_evalue>1.72304</Hsp_evalue>
 
1575
              <Hsp_query-from>144</Hsp_query-from>
 
1576
              <Hsp_query-to>170</Hsp_query-to>
 
1577
              <Hsp_hit-from>84</Hsp_hit-from>
 
1578
              <Hsp_hit-to>110</Hsp_hit-to>
 
1579
              <Hsp_query-frame>1</Hsp_query-frame>
 
1580
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1581
              <Hsp_identity>10</Hsp_identity>
 
1582
              <Hsp_positive>13</Hsp_positive>
 
1583
              <Hsp_align-len>27</Hsp_align-len>
 
1584
              <Hsp_qseq>NLIRQTVFAVSASETRPILTGVNWKVE</Hsp_qseq>
 
1585
              <Hsp_hseq>NAVKELVLASLFVSARPILEGTEWVKE</Hsp_hseq>
 
1586
              <Hsp_midline>N +++ V A      RPIL G  W  E</Hsp_midline>
 
1587
            </Hsp>
 
1588
          </Hit_hsps>
 
1589
        </Hit>
 
1590
        <Hit>
 
1591
          <Hit_num>12</Hit_num>
 
1592
          <Hit_id>gi|16410572|emb|CAC99234.1|</Hit_id>
 
1593
          <Hit_def>lmo1156 [Listeria monocytogenes]</Hit_def>
 
1594
          <Hit_accession>CAC99234</Hit_accession>
 
1595
          <Hit_len>606</Hit_len>
 
1596
          <Hit_hsps>
 
1597
            <Hsp>
 
1598
              <Hsp_num>1</Hsp_num>
 
1599
              <Hsp_bit-score>26.4658</Hsp_bit-score>
 
1600
              <Hsp_score>57</Hsp_score>
 
1601
              <Hsp_evalue>2.25036</Hsp_evalue>
 
1602
              <Hsp_query-from>75</Hsp_query-from>
 
1603
              <Hsp_query-to>141</Hsp_query-to>
 
1604
              <Hsp_hit-from>450</Hsp_hit-from>
 
1605
              <Hsp_hit-to>512</Hsp_hit-to>
 
1606
              <Hsp_query-frame>1</Hsp_query-frame>
 
1607
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1608
              <Hsp_identity>16</Hsp_identity>
 
1609
              <Hsp_positive>30</Hsp_positive>
 
1610
              <Hsp_gaps>4</Hsp_gaps>
 
1611
              <Hsp_align-len>67</Hsp_align-len>
 
1612
              <Hsp_qseq>IVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDL</Hsp_qseq>
 
1613
              <Hsp_hseq>IGLEDRYLAEDIKKYPLAKVE----SIFHIRHEDGTVQFFDTPLSPTVFAKVVIVKPDGFVPIPGDV</Hsp_hseq>
 
1614
              <Hsp_midline>I L+ R+ +E +KK P+A VE    + +      G  +F    L    +  +  ++    + IP D+</Hsp_midline>
 
1615
            </Hsp>
 
1616
          </Hit_hsps>
 
1617
        </Hit>
 
1618
        <Hit>
 
1619
          <Hit_num>13</Hit_num>
 
1620
          <Hit_id>gi|16411268|emb|CAC99892.1|</Hit_id>
 
1621
          <Hit_def>lmo1814 [Listeria monocytogenes]</Hit_def>
 
1622
          <Hit_accession>CAC99892</Hit_accession>
 
1623
          <Hit_len>552</Hit_len>
 
1624
          <Hit_hsps>
 
1625
            <Hsp>
 
1626
              <Hsp_num>1</Hsp_num>
 
1627
              <Hsp_bit-score>26.4658</Hsp_bit-score>
 
1628
              <Hsp_score>57</Hsp_score>
 
1629
              <Hsp_evalue>2.28823</Hsp_evalue>
 
1630
              <Hsp_query-from>211</Hsp_query-from>
 
1631
              <Hsp_query-to>238</Hsp_query-to>
 
1632
              <Hsp_hit-from>495</Hsp_hit-from>
 
1633
              <Hsp_hit-to>522</Hsp_hit-to>
 
1634
              <Hsp_query-frame>1</Hsp_query-frame>
 
1635
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1636
              <Hsp_identity>11</Hsp_identity>
 
1637
              <Hsp_positive>18</Hsp_positive>
 
1638
              <Hsp_align-len>28</Hsp_align-len>
 
1639
              <Hsp_qseq>LSKILDDNQELVDIVITETQVLFKAKNV</Hsp_qseq>
 
1640
              <Hsp_hseq>LEKLLDDDSEIVTIIVGEDSDTTKAETL</Hsp_hseq>
 
1641
              <Hsp_midline>L K+LDD+ E+V I++ E     KA+ +</Hsp_midline>
 
1642
            </Hsp>
 
1643
          </Hit_hsps>
 
1644
        </Hit>
 
1645
        <Hit>
 
1646
          <Hit_num>14</Hit_num>
 
1647
          <Hit_id>gi|16412064|emb|CAD00654.1|</Hit_id>
 
1648
          <Hit_def>peptidoglycan anchored protein (LPXTG motif) [Listeria monocytogenes]</Hit_def>
 
1649
          <Hit_accession>CAD00654</Hit_accession>
 
1650
          <Hit_len>1530</Hit_len>
 
1651
          <Hit_hsps>
 
1652
            <Hsp>
 
1653
              <Hsp_num>1</Hsp_num>
 
1654
              <Hsp_bit-score>26.0806</Hsp_bit-score>
 
1655
              <Hsp_score>56</Hsp_score>
 
1656
              <Hsp_evalue>2.68132</Hsp_evalue>
 
1657
              <Hsp_query-from>250</Hsp_query-from>
 
1658
              <Hsp_query-to>307</Hsp_query-to>
 
1659
              <Hsp_hit-from>1270</Hsp_hit-from>
 
1660
              <Hsp_hit-to>1322</Hsp_hit-to>
 
1661
              <Hsp_query-frame>1</Hsp_query-frame>
 
1662
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1663
              <Hsp_identity>17</Hsp_identity>
 
1664
              <Hsp_positive>27</Hsp_positive>
 
1665
              <Hsp_gaps>9</Hsp_gaps>
 
1666
              <Hsp_align-len>60</Hsp_align-len>
 
1667
              <Hsp_qseq>PDTTS--LIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKPADSLEISSNSP</Hsp_qseq>
 
1668
              <Hsp_hseq>PDAGSVKIIKQDSENGVRLAGAEF-------SLIAENGETLQTNLKTDEAGELEVNNLAP</Hsp_hseq>
 
1669
              <Hsp_midline>PD  S  +I Q+S+  + +   EF       SL+A  G      L    A  LE+++ +P</Hsp_midline>
 
1670
            </Hsp>
 
1671
          </Hit_hsps>
 
1672
        </Hit>
 
1673
        <Hit>
 
1674
          <Hit_num>15</Hit_num>
 
1675
          <Hit_id>gi|16411702|emb|CAD00310.1|</Hit_id>
 
1676
          <Hit_def>lmo2232 [Listeria monocytogenes]</Hit_def>
 
1677
          <Hit_accession>CAD00310</Hit_accession>
 
1678
          <Hit_len>434</Hit_len>
 
1679
          <Hit_hsps>
 
1680
            <Hsp>
 
1681
              <Hsp_num>1</Hsp_num>
 
1682
              <Hsp_bit-score>26.0806</Hsp_bit-score>
 
1683
              <Hsp_score>56</Hsp_score>
 
1684
              <Hsp_evalue>2.86641</Hsp_evalue>
 
1685
              <Hsp_query-from>118</Hsp_query-from>
 
1686
              <Hsp_query-to>146</Hsp_query-to>
 
1687
              <Hsp_hit-from>346</Hsp_hit-from>
 
1688
              <Hsp_hit-to>377</Hsp_hit-to>
 
1689
              <Hsp_query-frame>1</Hsp_query-frame>
 
1690
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1691
              <Hsp_identity>10</Hsp_identity>
 
1692
              <Hsp_positive>19</Hsp_positive>
 
1693
              <Hsp_gaps>3</Hsp_gaps>
 
1694
              <Hsp_align-len>32</Hsp_align-len>
 
1695
              <Hsp_qseq>LDADEYPHLPQIEEHHAI---QIPTDLLKNLI</Hsp_qseq>
 
1696
              <Hsp_hseq>FDADEIPEIRKIKDGHYIVDAKLLIDEVNNIL</Hsp_hseq>
 
1697
              <Hsp_midline> DADE P + +I++ H I   ++  D + N++</Hsp_midline>
 
1698
            </Hsp>
 
1699
          </Hit_hsps>
 
1700
        </Hit>
 
1701
        <Hit>
 
1702
          <Hit_num>16</Hit_num>
 
1703
          <Hit_id>gi|16410089|emb|CAC98778.1|</Hit_id>
 
1704
          <Hit_def>lmo0700 [Listeria monocytogenes]</Hit_def>
 
1705
          <Hit_accession>CAC98778</Hit_accession>
 
1706
          <Hit_len>515</Hit_len>
 
1707
          <Hit_hsps>
 
1708
            <Hsp>
 
1709
              <Hsp_num>1</Hsp_num>
 
1710
              <Hsp_bit-score>26.0806</Hsp_bit-score>
 
1711
              <Hsp_score>56</Hsp_score>
 
1712
              <Hsp_evalue>2.91464</Hsp_evalue>
 
1713
              <Hsp_query-from>129</Hsp_query-from>
 
1714
              <Hsp_query-to>231</Hsp_query-to>
 
1715
              <Hsp_hit-from>360</Hsp_hit-from>
 
1716
              <Hsp_hit-to>461</Hsp_hit-to>
 
1717
              <Hsp_query-frame>1</Hsp_query-frame>
 
1718
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1719
              <Hsp_identity>24</Hsp_identity>
 
1720
              <Hsp_positive>49</Hsp_positive>
 
1721
              <Hsp_gaps>13</Hsp_gaps>
 
1722
              <Hsp_align-len>109</Hsp_align-len>
 
1723
              <Hsp_qseq>IEEHHAIQI--PTDL---LKNLIRQTVFAVSASETRPILTGVNWK-VENGELLCTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQV</Hsp_qseq>
 
1724
              <Hsp_hseq>IEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKE----ATTPAEIIEPEKPAE-PI--KHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKV</Hsp_hseq>
 
1725
              <Hsp_midline>IEE   +++  P ++   LK  + Q     +A E   ++ G+  K V   E    AT    +   +   + P    + V+   ++L+E+ +IL+D    +++V    +V</Hsp_midline>
 
1726
            </Hsp>
 
1727
          </Hit_hsps>
 
1728
        </Hit>
 
1729
        <Hit>
 
1730
          <Hit_num>17</Hit_num>
 
1731
          <Hit_id>gi|16409997|emb|CAC98686.1|</Hit_id>
 
1732
          <Hit_def>lmo0608 [Listeria monocytogenes]</Hit_def>
 
1733
          <Hit_accession>CAC98686</Hit_accession>
 
1734
          <Hit_len>605</Hit_len>
 
1735
          <Hit_hsps>
 
1736
            <Hsp>
 
1737
              <Hsp_num>1</Hsp_num>
 
1738
              <Hsp_bit-score>25.6954</Hsp_bit-score>
 
1739
              <Hsp_score>55</Hsp_score>
 
1740
              <Hsp_evalue>3.68169</Hsp_evalue>
 
1741
              <Hsp_query-from>66</Hsp_query-from>
 
1742
              <Hsp_query-to>119</Hsp_query-to>
 
1743
              <Hsp_hit-from>188</Hsp_hit-from>
 
1744
              <Hsp_hit-to>249</Hsp_hit-to>
 
1745
              <Hsp_query-frame>1</Hsp_query-frame>
 
1746
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1747
              <Hsp_identity>17</Hsp_identity>
 
1748
              <Hsp_positive>27</Hsp_positive>
 
1749
              <Hsp_gaps>8</Hsp_gaps>
 
1750
              <Hsp_align-len>62</Hsp_align-len>
 
1751
              <Hsp_qseq>IVTIDQPGSIVLQA-------RFFSEIVKKLPMATVEIEVQNQYLTIIRS-GKAEFNLNGLD</Hsp_qseq>
 
1752
              <Hsp_hseq>IVLVTVPISIILVAIIAGRSQRYFGAQQRNLGILNDTVEETYGGQTIIKAFGQEKKTLVKFD</Hsp_hseq>
 
1753
              <Hsp_midline>IV +  P SI+L A       R+F    + L +    +E      TII++ G+ +  L   D</Hsp_midline>
 
1754
            </Hsp>
 
1755
          </Hit_hsps>
 
1756
        </Hit>
 
1757
        <Hit>
 
1758
          <Hit_num>18</Hit_num>
 
1759
          <Hit_id>gi|16410039|emb|CAC98728.1|</Hit_id>
 
1760
          <Hit_def>lmo0650 [Listeria monocytogenes]</Hit_def>
 
1761
          <Hit_accession>CAC98728</Hit_accession>
 
1762
          <Hit_len>896</Hit_len>
 
1763
          <Hit_hsps>
 
1764
            <Hsp>
 
1765
              <Hsp_num>1</Hsp_num>
 
1766
              <Hsp_bit-score>25.3102</Hsp_bit-score>
 
1767
              <Hsp_score>54</Hsp_score>
 
1768
              <Hsp_evalue>4.53564</Hsp_evalue>
 
1769
              <Hsp_query-from>291</Hsp_query-from>
 
1770
              <Hsp_query-to>317</Hsp_query-to>
 
1771
              <Hsp_hit-from>228</Hsp_hit-from>
 
1772
              <Hsp_hit-to>254</Hsp_hit-to>
 
1773
              <Hsp_query-frame>1</Hsp_query-frame>
 
1774
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1775
              <Hsp_identity>10</Hsp_identity>
 
1776
              <Hsp_positive>15</Hsp_positive>
 
1777
              <Hsp_align-len>27</Hsp_align-len>
 
1778
              <Hsp_qseq>KLSAKPADSLEISSNSPEIGKVVEAVL</Hsp_qseq>
 
1779
              <Hsp_hseq>ELKAKANQVVELNEKIPELNKATENVL</Hsp_hseq>
 
1780
              <Hsp_midline>+L AK    +E++   PE+ K  E VL</Hsp_midline>
 
1781
            </Hsp>
 
1782
          </Hit_hsps>
 
1783
        </Hit>
 
1784
        <Hit>
 
1785
          <Hit_num>19</Hit_num>
 
1786
          <Hit_id>gi|16411502|emb|CAD00110.1|</Hit_id>
 
1787
          <Hit_def>ftsZ [Listeria monocytogenes]</Hit_def>
 
1788
          <Hit_accession>CAD00110</Hit_accession>
 
1789
          <Hit_len>391</Hit_len>
 
1790
          <Hit_hsps>
 
1791
            <Hsp>
 
1792
              <Hsp_num>1</Hsp_num>
 
1793
              <Hsp_bit-score>24.925</Hsp_bit-score>
 
1794
              <Hsp_score>53</Hsp_score>
 
1795
              <Hsp_evalue>6.28001</Hsp_evalue>
 
1796
              <Hsp_query-from>251</Hsp_query-from>
 
1797
              <Hsp_query-to>296</Hsp_query-to>
 
1798
              <Hsp_hit-from>159</Hsp_hit-from>
 
1799
              <Hsp_hit-to>204</Hsp_hit-to>
 
1800
              <Hsp_query-frame>1</Hsp_query-frame>
 
1801
              <Hsp_hit-frame>1</Hsp_hit-frame>
 
1802
              <Hsp_identity>14</Hsp_identity>
 
1803
              <Hsp_positive>21</Hsp_positive>
 
1804
              <Hsp_align-len>46</Hsp_align-len>
 
1805
              <Hsp_qseq>DTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAKP</Hsp_qseq>
 
1806
              <Hsp_hseq>DTLIVIPNDRLLQIVDKNTPMLEAFREADNVLRQGVQGISDLIAVP</Hsp_hseq>
 
1807
              <Hsp_midline>DT  +IP +   +IV      L+A   A  + R+G   +  L A P</Hsp_midline>
 
1808
            </Hsp>
 
1809
          </Hit_hsps>
 
1810
        </Hit>
 
1811
      </Iteration_hits>
 
1812
      <Iteration_stat>
 
1813
        <Statistics>
 
1814
          <Statistics_db-num>2846</Statistics_db-num>
 
1815
          <Statistics_db-len>870878</Statistics_db-len>
 
1816
          <Statistics_hsp-len>82</Statistics_hsp-len>
 
1817
          <Statistics_eff-space>1.88702e+08</Statistics_eff-space>
 
1818
          <Statistics_kappa>0.0450367</Statistics_kappa>
 
1819
          <Statistics_lambda>0.267</Statistics_lambda>
 
1820
          <Statistics_entropy>0.14</Statistics_entropy>
 
1821
        </Statistics>
 
1822
      </Iteration_stat>
 
1823
      <Iteration_message>CONVERGED</Iteration_message>
 
1824
    </Iteration>
 
1825
  </BlastOutput_iterations>
 
1826
</BlastOutput>