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Viewing changes to t/data/map_hem/HEM1-HEM2.fa.revcom

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM1-HEM2.fa.revcom
 
1
>SGD_Scer_YDR232W HEM1 "5-aminolevulinate synthase, catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p"
 
2
CTTCACTACAATGCTTTACCGAGCAGTGGAGTTTGATATAGTGGTGGTACCCCCGACGGT
 
3
GCTATAATAAGCTTGCCTGCACGGCTTACCCTACCGCTCGGAAAGGCCGCCTTCGTCGCT
 
4
CATTGGTCTGCGGCCGCGGGCGCTTTTTGGTCATTGTTCATATATGAAGAAAGAGCAGGA
 
5
ACGGAAATTTTTCATCTTGCCTTGCCCATTGTTCTGATCCATGCGTTGTTAGAAATACAA
 
6
CGTTTGCATCATACCAAACTTCTCCATTCCGTCAGCTGATACTCTATTCGGTTGTGTGTT
 
7
GCACCCTGCTCTGCTGTCTCTCAACCGTTCTTCCTTTACACGCCTTCCCTTCTCAGCTCG
 
8
CGTTTCTTTTTTTTTTATCCCACTCTTTTCTTTTTTCTTTCCTATATATTGCCCATATAA
 
9
GTTTGGTTGGAAGGAAAACTAATAGAGCTAGTTGTTGTCCCTCAATAATCATAACAGTAC
 
10
TTAGGTTTTTTTTTCAGT
 
11
>MIT_Spar_c117_4603 YDR232W 5' untranslated region, Contig c117 17441 - 19440, 2000 bp (revcom)
 
12
GCTGTGAACTATACTGCAATGCTTCACCGTGCTGTGGAACTTGATATAGTGGTCCCCCCG
 
13
ACGGTGCTATAATAAGCTTGCCTGCACGGCTTACCCTACCACTCGGAAAGGCCGCCTTCG
 
14
TCGCTCATTGGTCTGCGGCCGCGGGCGCTTTTTGGTCATTGTTCATATATGAAGAAAGAG
 
15
CAGGAACAGAAATTTTTCATCTTGCCTTGCCCATTGTTCTGACCCATGCGTTGCTACAAA
 
16
TATAGCGTTTGCATCGTACCAAACTCCTCCATCCCGTCAGCTGATACTCTATTCGGTTGT
 
17
GTGTTGCACCCTGCTCTGCTCTCTCTCAACCGTTCTTCCTTTACACGCCTTCTCTTCTCA
 
18
GCTCGCGTTTCTTTTTTTATCCTACTCTTTTCTTTTTTCTTTCCTATATATTGCCCATAT
 
19
AAGTTTGGTTGGAAGGAAAACAAATAGAGCTAGCCGTTGTCCCTCAATAATCACAACAGT
 
20
ACTTGGTTTTTTTTCAGT
 
21
>MIT_Smik_c228_4055 YDR232W 5' untranslated region, Contig c228 4702 - 6701(revcom), 2000 bp (revcom)
 
22
TGTAGCCTATACAGCAATGTTACGCTGTACTGTGGAGTTTGATATAATGCTTCCCCCCGA
 
23
CGGTGCTATAATAAACTTGCCTGCATGGATTACCCTACCCTTCAAAAGGCCGCTTTCGTC
 
24
GCTCATTGGTCTGCGCTTGCGGGCGCTTTTTGGTCATTGTTCATATATGAAGAAAGAGCA
 
25
GGAACGGAAATTTTCATCTTGCCTTGCCCATTGTTCTAATTCAATGTTGCGTTGCTAAAA
 
26
GCATCACTTTTGCATCATACCAAACTCCTCCATTCCGTCAGCTGGTACTCTACTCGGTTG
 
27
TGTTGCACCCTCCTCTACTGTCATTCAACCGTTCTGGCTTCACACGTCCTCCCTTCTCAG
 
28
GTCGCATTTCTTTTTTTTCGTGCTCTTTTCTTTTTTCTGTCCTATATATTTCCCATATAA
 
29
GTTAGGTTGGAAGAAAAAACAAACAAAGCTGGTCATTAGTCCTCAATAATCATATCACTA
 
30
CTTAGTTTTTCTCTCGGT
 
31
>WashU_Skud_Contig2069.5 YDR232W 5' untranslated region, Contig c2069 5476 - 7475, 2000 bp (revcom)
 
32
CAAGACTGTGCTGTAATGGCCTACCATGCTGAAGAGCTGATATAGTGGTGCCCCTTCGAC
 
33
GGTGTTATGACGGACTTGCTTGCGCGGCTTACCCTGCTGCTACGAAAGGCCGCCTTCGTC
 
34
GCTCATTGGTCTGCGGCCGCGGACGCTTTTTGGTCATTGTCATATATGAAGCAAGAGCAG
 
35
GAACGGAAATTTTTCACATTGCCTTGCCCATTGTTCCGATCCAGTGTTGCGTTGGTGGAA
 
36
ATATAGCTTTTACACTGTACCAAACTACCCACTCCGTCTGCTGGTACTCTACTCGGTTGT
 
37
GTTGCGCTGTGCTCTGCTGTCTCTCAACCGTTCTTCCCTCCACACGGTTCTCTTCTCTCG
 
38
CGTTTCTTTTTTTTTTTCCTATTCTTTTCTTTTTTCTTTCCTTTATATTTTCCATATAAG
 
39
TTTGGTTGGAAGAAAAATCAAATAGAGCTAGTCCCTATTCTCAATATTCACAGTAGCACG
 
40
ACTCGGATTATTTTCAGT
 
41
>WashU_Sbay_Contig461.5 YDR232W 5' untranslated region, Contig c461 4000 - 5999, 2000 bp (revcom)
 
42
TTTGACTAGCTATAGAGTGTGCTGCAATGTACTGGGAGCTGATATAGCGGTCCCCCTCGA
 
43
CGGTGCTATAGCGGACCTTGCCTGTCCCATCTTACCCTGCCCCGCCCAAAAGCCGTCTTC
 
44
GTCGCTCATTGGTCTGCGCCCGCCGGCGTTTTTTTGGTCATTGTTAATATATCAAGCAAG
 
45
AGCAGGAACGGAGATTTTTCATCTTGCCTTGCCCATTGTTCTGTCCCGGTGCTGCGCTGT
 
46
TGGAACCACACCTTCTGCACCGTACCACATCGCCCATCTCGTCTGCTGGTACTCTAATCG
 
47
GTTTGCACCCTGCTCTGTTGTCTCTCAACGGTTCTTCCCTCCACACGCTCTCCTTTCGGC
 
48
AGCTCACGTTTCTTTTTTTTCTTCCTGTTCTTTTCTTTTTTTCCTTCCTTTGATTTCCAT
 
49
ATAAGTTTGGTTGGAAGAAAAAACAAATAAAGCTAGTTGCTATCCTCAATAATAACAGCA
 
50
CCACTTGGACTTTTTAGT
 
51
>SGD_Scer_YGL040C HEM2 "Delta-aminolevulinate dehydratase, a homo-octameric enzyme, catalyzes the conversion of delta-aminolevulinic acid to porphobilinogen, the second step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus"
 
52
GATTCTATTGAAACGACACCATACAGCTCATACGAGTCCGGTGTACTGGCACAGAACACA
 
53
GATGACAATACAAAAGTAAATAAATCTATCGACAGCAATTCCTATTTTCTTTTACATTTA
 
54
TATTGATTAGCTTACGATTTCTGTATTTATAGAGCGTGTAGTTACATATCCAGATACCTG
 
55
TCTTCTAGGTGAACAGTTGGTTTTCAGTTCAAAAATTATATAGGATCTTGGACGGTTAGC
 
56
TTTCCTCCTCATGATCCACTCTTTCGGGAACAAGATAAATTATTGTTTAGTTTTGATTAG
 
57
CTTTACTTTAATTCGCACAAAAAAAAGCCTGCATTGTCACGAGAACATTGAAACATATAC
 
58
AAAAAACAAATTTGAAATAGAAAACAAAGCAATTTACAGAAATGACTGCCTGGTGCTAAT
 
59
TCTTGCATATATTTTATTTTTAATTAACTAGAAATCAGCGTCAATTATAGTTTCTGGTGA
 
60
GTCAGCCAATGTCTGTAAATAAAAACAATATGCTTAAGAGGATTAACAGTGGCACAAGAG
 
61
GCAAAGAAGGGAAGAAGGCGTACACGTCCACATGAATATATAAAAAAGAAGTGTTACATC
 
62
AATTGGAACCCATCTTTCGGAACGTTTTCTATCTGCTACAAGCCTGTGTCACCGAATTAC
 
63
TTTATTGGGTCTTGTAGAGACGCCGAAATACATCATCATTCCAAGATCGACGATAAAAAT
 
64
CATCCAAAAAATTGTTGCCGAAAAAAAAATTGGAAAAGGTGAAAAAAAAATCAAAATACG
 
65
GGTAAACGAGCAATCCCTGTTCGGTGCGGTGATTGGCTTGAGGCAAGCTTCCCGCTTGAT
 
66
TTATATAAGAGTAAGGCAACCTAATAAATGCTAGCAACATCTATGCGCCACTCTATTGTC
 
67
TTTGATTTTCTTGCCCAATCAGCCAAATAAAAAAAAGTTTTACTGCTTACTCATATTATT
 
68
GCTTACTCCAGTAATTCATACCTAGAAAATTGACAAAACC
 
69
>MIT_Spar_c19_8512 YGL040C 5' untranslated region, Contig c19 1 - 1802, 2000 bp (revcom)
 
70
TACACTGGCATAGAACACAGATCATAATACAGAAAAATAGCAATCGAACCCTAAAAATAT
 
71
CTATCTACAATAGTTCCTGCTTTTTTTTCACATCTATTTTCATTAACCTCTCCATCTTTG
 
72
TATTGGCGGTACGACATATACAATAAAAAGTTTGATTTAGTTGGCAAAAGAAGAAAAATA
 
73
CATGGATTTTTACATATGCTCAAGTTCGTTTTGACCGTATCTGTTAAGCAAGGTTAGCGC
 
74
AGGTGTACATTTTGTGGAGGACATCAATAAATTATTATTTAGTTCTTCACAGCTTTATTT
 
75
TCAATCAAGAAAAGAGAAGAGCTTGCATTGCCATGCAGTATATTGAGAAATATACAAGAA
 
76
GAAAGCCATAAAATAGAAAACAAACTAATGTGGAAAAATTGAATTATTAATGGTAATGTT
 
77
TTGATTCATTTTATTTTTTAACTAAGGTAGTAGAAACCATCGCCGATTATAATTTTAGGC
 
78
GAGTCAAGTAGTATCTGTAAATAAAAACAATATGTGAAGATTCAGTGACACAAGAGCCAA
 
79
AGAAGGCAAAACAAGACGTACGTGTTCACATAAATATACGAAGAAAAAGTATGACCATAG
 
80
ATAAAAACCTTTTTTTTTTTTTTGAAACCTTTCCTACCTGCCACAAGCTTGTCTTACTTA
 
81
AGTGTTTTGTTGGGTGTTGTAAAGAGGCAGGTATACTCCCAAGATTGACGATAAAAGTCA
 
82
TTCAAAATTGTTGCCGAAAAAAAAAAATTTCAAAAGGTGAAAAAAAAATTCAAACTACGG
 
83
GTAAACGAGCAATCCCTGTTCGGTGCGGTGATTGGCCTGAGGCAAGCTGCCCGCTTGATT
 
84
TATAAAAGAGTAAGGCAACCTAATAAATGCTAGCAAACTTTATGTGTCATTCTATTGTCC
 
85
TTGTTTTTTGGCCCAATCAGCCACATAAAACAAAAAGTTTTACTGCTTCCCCATATTATT
 
86
GCCTGCCCTAGGAATCCATATTTAGAATATTGACAAAACC
 
87
>MIT_Smik_c273_7756 YGL040C 5' untranslated region, Contig c273 1 - 1807, 2000 bp (revcom)
 
88
TCTAGTATATTTTATATACCTAATAATATTGCCTTTATCAACAATGGAATCCCAAAAATT
 
89
ATCTCGAAATTCACAAATCTCTCAGTAGAGACTATTTATGTGAGCAGGACACCGGTTACA
 
90
AAGGGTGGAGATGATGACTCGTTTTCTACAAAATGAGCAGGGCAAGACGAAATTTCCGAA
 
91
CTATAATTCTACCTCTATGTTTAGGAGCTTTTCCCAATCATATAATCAAAACGACGGCCA
 
92
CATTTAGTCTCACATGGCGCTTAATTATGTTTAATTTTGTCTCTCCTTACGTACTTATAT
 
93
GGCATAGCTTAGAGCGCTTTCACCACTTAAAATCCATCTCACATCTGCAATGTATGGTCA
 
94
AAATGAATATGGCTAAATCGTAATCGAAGAGAGTACTTATTAATGGGGGAATATTTTATT
 
95
AAAGATCAAGGTAACTTTATTGTTTAGTTCTGTGCGGCCTTGTTTTAAGCATTGTAAAGA
 
96
AAAATATCTACTCGGTGATTCATGTCCAAGGTATTGAGATACATAGATAACGATAACTAT
 
97
AAAAAAGTGGGAATAAGATATACACATACATATCTGCAAACCAAAAATAAGTGTCACCGT
 
98
TGACAGGAAACATCACTCGAAAATTTGGGTCCACTTACTCATAAGTTAGCTATTCCAATA
 
99
AATATTGTAACTGGGCGTTTCAAACATACAAGTGTATATTACTCCAGGATTGATGATCAA
 
100
AGTCATTCAAAGGCGCTGCCGAAAAAAATTGGTAGAAGATGAAAAAAAAAATCGAACAAC
 
101
GGGTAAACGAGCAATCCTTATTCGGTGCGGTGATTGGCCTGAGGCAACATACACTCTTGA
 
102
TTTATAAAAAAAAGCAAGTGTGTAGGTTGCTAGCAAACTCGGTGCGTCATTCTATTGTTC
 
103
CTGATTTATTGGCCTATTTAGCTATATAAAAAGAAAATTTTGCAATTTCCTTAAATTGTG
 
104
ACTTACTCTAGATATCCGTATTAAGAAAACTGGTAAAACC
 
105
>MIT_Sbay_c77_8808 YGL040C 5' untranslated region, Contig c77 1 - 1377, 2000 bp (revcom)
 
106
TTTACTGTTTTTGGGTAATTAGCTTATTCATGATATGACAATTTCATATCAATCCACTCG
 
107
GCTTACCTTAAACATGATGTCTGACATCGCCATAACGACTAAATAAAGTCTGTGAGTCTC
 
108
TGTGTTCAGACAGGAGAGTACCTTTTGAAGTATTATTGAATATGAATTTATTGTTTAGTT
 
109
CTATGTATCTCTACTTAAACTTTATCCCAATATATTTCGTGTTTCCTTGTCCACATATTG
 
110
CAACAAATATATAAAGAAATTTTAAAGGGACAAATAAACTAGCATGTAAATTAACGATAG
 
111
ATTAACAAAAATATTTCTATTCATATGGTTTTATACTCAATATAAGAATTACTACATGAT
 
112
GTACTTATGCGTAAATCAAGCAGTGTCTGTAGATAAACCACGCAAAATAAGATATATTTG
 
113
CGACGAAACAATTTATCGTAAAGAAACAACGAAATGTGAAGCAAGATATTTACATTTGAC
 
114
ATGCAATTATTGTAGTAAGAATGGTGTCACCGTTAACAACAAAAAGATCTAAAAAACAAT
 
115
TACAGAATACACCCGCCATACATGTAAAGTTTTTATCACTCTCTTACTGAAGTTCTTTAT
 
116
CATGATGTTTAGAAAGAATTTACATTGAAGGATTGGCATCCATCATCAATATGATTTGTT
 
117
CATATCTTTACCTGCGTGCCCTAAAATATGACAGTCCAGTCATTGAAGACTAATGATCAA
 
118
AATTTTTCGAAAACGCTGCCAAATAGAAAAAGGCAAAAAATGAAAAATTTGGTGCACAAC
 
119
GGTAAACGAGCATCTCCGGGCGGTGCGGTGATTGGCCTGCGGCAGGCTGCCTGATTTATA
 
120
AAAGAGCAAGGCAACACAATAAAAGGCTAGTGACGTCTATGCATCACTCTATTGTTAATG
 
121
TTAGTTCATAGCCCATTCCACGACATAAAACGGTAATTTTGTAATTTATACGTATTGTTA
 
122
CTTCTTCCAGATATCCTTACCAGAAAAACACTGACAAAGT
 
123
>WashU_Skud_Contig2052.17 YGL040C 5' untranslated region, Contig c2052 29967 - 31966, 2000 bp (revcom)
 
124
GTAATTCTCAGGTGATGTAGTTTTCCTTCGTTCAGCCATGACGGAAACTACATAAGAGAG
 
125
TATAATTTTTGAACATTTTAGATATCTCAATCTTGTTCAATTGTATCTACCAAGCAACAT
 
126
CGACGAAAGATGAGTCACAACTGACAAACAGAGAAAGCTTTATGGGGATGTGTGAAAAAC
 
127
GATTTATTGTTTAGTTGTCCTTCACCATTCTTTCGCCTTCATAGGAAGAAAGTAAGAAAA
 
128
CGGTATTCACCCATCCTAATACAGTGGCATATGTATAAAGAAAAATTCAAGTTAGAAAAC
 
129
AAACCAATGCGGCAGTTATTGTTTGTTCAGTGCTAATGTATTTATGGGTTCCTTTTCTTC
 
130
AATTGAGACATGAAAAAGAACTACTACCTGATAAACTCTATAGTAAATCAATCAGCACCT
 
131
GTAAATAAATGCTGCATATCTGGAATTACAAGCAATCGCAAAAAAAAAAGAAAAGACGAA
 
132
ACAAGATGTCCAGATTACCGTACGAAAAAAGGAAGAGTCTTCATCGACGCTAAAACACAA
 
133
ATTCAAGAAGATGTCAGGAATATAAGGCCATTTGCAAAAAACTCACATTATTATTTCCTG
 
134
ATATTAAATCCTCTAGAGGCCTTGATTATTTATTACGAGTAAAATTTACCGATTTGCCTA
 
135
CCTTTGTGCCGTGAAAACACGAACATAAATCATTTCAAGATCAATGACCAAGACATTCAA
 
136
AAACGGCGTCAAAAAAAAAAAAGTAGATGATGCGGAAAATGAAAAACTTTGAACGCAACG
 
137
GGTAAACGAGCAATCCCTGTTCGGTGCGGTGATTGGCCTGAGGCAAGCTGCCTGCCCAAT
 
138
TTATAAAAGAGAAAGGCAACTTATATGAAGAGTAGTGACGTCTATGCGTCATCCTATTGT
 
139
TCATGATTTCTGGCTAAATTAGCTATATAAGTGGAAGTTTTGTGGTTTCCACATATTAAT
 
140
ATTTTCTCCAGGCATCCATATCAGAAAACACTGACAAATC