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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/longnames.aln
 
1
CLUSTAL W (1.82) multiple sequence alignment
 
2
 
 
3
 
 
4
Spar_21273             -------------MPFAQIVIGPPGSGKSTYCN------GCSQFFNAIGRHSQVVNMDPA
 
5
YOR262W                -------------MPFAQIVIGPPGSGKSTYCN------GCSQFFNAIGRHSQVVNMDPA
 
6
Smik_Contig1103.1      -------------MPFAQIVIGPPGSGKSTYCN------GCSQFFNAIGRHSQVVNMDPA
 
7
Skud_Contig1703.7      -------------MPFAQIVIGPPGSGKSTYCN------GCSQFFNAIGRHSQVVNMDPA
 
8
Sbay_Contig635.43      -------------MPFAQIVIGPPGSGKSTYCN------GCSQFFNAIGRHSQVVNMDPA
 
9
Scas_Contig692.20      -------------MPFAQIVIGPPGSGKSTYCN------GCSQFFNAIGRHGQIVNMDPA
 
10
Sklu_Contig2277.4      -------------MPFGQIVIGPPGSGKSTYCN------GCSQFFNAVGRHAQVINMDPA
 
11
AAL117C                -------------MAYGQIVIGPPGSGKSTYCN------GCSQFFNAIGRHARIVNMDPA
 
12
SPAC144.07c            -------------MPFCQVVVGPPGSGKSTYCF------GMYQLLSAIGRSSIIVNLDPA
 
13
MG06110.4              -----------------------------------------MGFLGAIGRACSVVNLDPA
 
14
NCU09745.1             ----------------------------------MTSPLPVQQFMGAIGRQCSVVNLDPA
 
15
FG05298.1              -------------MPFAQLVLGSPGCGKSTYCDGIQLTGQVHQFLGAIGRACSVVNLDPA
 
16
AN2438.1               ------------------------------------------------------------
 
17
183.m01790             MDDKELEIPVEHSTAFGQLVTGPPGAGKSTYCH------GLHQFLTAIGRPVHIINLDPA
 
18
                                                                                   
 
19
 
 
20
Spar_21273             NDALPYPCAVDIRDFITLEEIMQEQQLGPNGGLVYAVESLDKSIDLFILQIKSLV--EEE
 
21
YOR262W                NDALPYPCAVDIRDFITLEEIMQEQQLGPNGGLMYAVESLDNSIDLFILQIKSLV--EEE
 
22
Smik_Contig1103.1      NDALPYPCAVDIRDFITLEEIMQEQQLGPNGGLMYAVESLDKSIDLFLLQIKSLV--EEE
 
23
Skud_Contig1703.7      NDALPYPCAVDIRDFITLEEVMQEQQLGPNGGLMYAVESLDNSIDLFILQIKSLV--EEE
 
24
Sbay_Contig635.43      NDALPYPCAVDIRDFITLEEIMKEQHLGPNGGLMYAVESLDKSIDLFILQIKSLV--EEE
 
25
Scas_Contig692.20      NDALPYPCAVDIRDFVTLEEIMQEQQLGPNGGLMYAVESLDESIDLFILQIKSLV--QEE
 
26
Sklu_Contig2277.4      NDSLPYPCAVDIRDFITLEEIMTEQQLGPNGGLMYALESLDKSIDLFVLQIKSLV--QDE
 
27
AAL117C                NDSLPYQCDVDIRDFITLEEIMNEQHLGPNGGLVYAFESVEHSLSLFALQIKTLV--KDE
 
28
SPAC144.07c            NDFIKYPCAIDIRKVLDVEMIQKDYDLGPNGALIYAMEAIEYHVEWLLKELK-----KHR
 
29
MG06110.4              NDHTSYPCALDIRNLVTLEEIMGDDNLGPNGGILYAIEELEHNFEWLEDGLK-----ELG
 
30
NCU09745.1             NDHTNYPCALDIRDLVTLEEIMADDKLGPNGGILYALEELENNMEWLENGLK-----ELG
 
31
FG05298.1              NDHTNYPAALDIRSLIKLEEIMKDDKLGPNGGILYALEELEHNFEWLEEGLK-----EFS
 
32
AN2438.1               ---------------------MSEDQLGPNGGVLYALEELEENFDFLEEGLK-----ELG
 
33
183.m01790             VPNPPYPCSINITELITLESVMEEYNLGPNGAMLYCIEFLEANFDWLVERLDEVLAEEGG
 
34
                                              : .*****.::*..* ::  .. :   :.     :  
 
35
 
 
36
Spar_21273             KAYLVFDCPGQVELFTHHSSLFSIFKKMEKELDMRFCVVNLIDCFYMTSPSQYISILLLA
 
37
YOR262W                KAYLVFDCPGQVELFTHHSSLFNIFKKMEKELDIRFCVVNLIDCFYMTSPSQYISILLLA
 
38
Smik_Contig1103.1      KAYLVFDCPGQVELFTHHSSLFNIFKKMEKELDMRFCVINLIDCFYMTSPSQYVSILLLA
 
39
Skud_Contig1703.7      KAYLVFDCPGQVELFTHHSSLFSIFKKMEKELDMRFCVVNLIDCFYMTSPSQYVSILLLA
 
40
Sbay_Contig635.43      KAYVVFDCPGQVELFTHHSSLFSIFKKLEKELDMRFCVVNLIDCFYMTSPSQYVSILLLA
 
41
Scas_Contig692.20      KAYLVFDCPGQVELFTHHSSLFKIFKKLEKELDMRFCVVNLIDSFYITSPSQYVSILLLA
 
42
Sklu_Contig2277.4      HAYVVFDCPGQVELFTHHSSLFRIFKKLERELDMRLCVVNLIDCFYITSPSQYVSILLLA
 
43
AAL117C                NAYLVFDCPGQVELFTHHSALSKIFQQLVRDLDLRVCVVNLMDSIYITSPSQYVSVLLLA
 
44
SPAC144.07c            DSYVIFDCPGQVELFTNHNSLQKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVC
 
45
MG06110.4              DDYILFDCPGQVELYTHHNSLRNIFFKLQK-LGYRLVVVHLSDSICLTQPSLYISNLLLA
 
46
NCU09745.1             EDYVLFDCPGQVELYTHHNSLRNIFYRLQK-LGYRLVVVHLSDCFCLTQPSLYISNVLLS
 
47
FG05298.1              EDYILFDCPGQVELYTHHNSLRNIFYKLQK-IGFRLVSVHLSDSFCLTQPSLYVSNVLLS
 
48
AN2438.1               EDYIIFDCPGQVEIFTHHSSLRNIFFKIQK-MGYRLIVLHLIDSYNLTLPSMYISSLILC
 
49
183.m01790             NGYVVFDTPGQAELWTNHDSLKNVVEKLVK-MDYRLAAVHLSDAHYITDASKFISVVLLA
 
50
                       . *::** ***.*::*:*.:*  :.  : : :. *   ::* *.   * .* ::* :::.
 
51
 
 
52
Spar_21273             LRSMLMMDLPHINVFSKIDMLKSYGELPFRLDYYTEVQDLDYLEPYIEKEGSSVLGKKYS
 
53
YOR262W                LRSMLMMDLPHINVFSKIDMLKSYGELPFRLDYYTEVQDLDYLEPYIEKEGSSVLGKKYS
 
54
Smik_Contig1103.1      LRSMLMMDLPHINVFSKIDMLKSYGELPFRLDYYTEVQDLDYLEPYIEKEGSSVLGKKYN
 
55
Skud_Contig1703.7      LRSMLMMDLPHINVFSKIDMLKSYGELPFRLDYYTEVQELDHLEPYIEKEGSSVLGKKYS
 
56
Sbay_Contig635.43      LRSMLMMDLPHINVFSKIDKLKSYGELPFRLDYYTEVQDLDYLEPYIEKEGSGALGKRYS
 
57
Scas_Contig692.20      LRSMLMMDLPQINVFSKIDMLKSYGELPFRLDYYTEVQDLDYLQPFIEKESSSVLGRRYS
 
58
Sklu_Contig2277.4      LRSMLMMDLPHINVFSKIDLLKSYGELPFRLDYYTEVQELDYLKPHIDKEGSSVLGRKYS
 
59
AAL117C                LRSMLMMDLPHINVLSKIDMLSSYGDLPFRLDYYTEVQDLEYLQPHIEREHKGAKALRYR
 
60
SPAC144.07c            LKGMLQLDMPHVNILSKADLLCTYGTLPMKLDFFTEVQDLSYLAPLLDRDKR---LQRYS
 
61
MG06110.4              LRAMLQMDLSHVNVLTKIDKVSSYDRLAFNLDFYTEVHDLSYLLPELEAENPSLRSEKFA
 
62
NCU09745.1             LRAMLQMDLPHINVLTKIDKISSYDPLPFNLDYYTEVQDLRYLMPSLDAESPALKKGKFT
 
63
FG05298.1              LRAMIQMDMPHINILSKIDKVADYDELPFNLDYYTDVDDLTYLTPHLETESPALRSEKFG
 
64
AN2438.1               LRAMLQMDLPHLNVLTKIDNLSNYTSLPFNLDFYTEVQDLTYLLPHLEAESSRLSHEKFG
 
65
183.m01790             LRAMLQMEMPHLNVLSKIDLISTYGELPFDLSYYTEVQDLSYLLGSLDSDPR---TAKYH
 
66
                       *:.*: :::.::*:::* * :  *  *.: *.::*:*.:* :*   :: :       :: 
 
67
 
 
68
Spar_21273             KLTETIKELVSDFNLVSFEVLSVDDKESMINLQGVIDKANGYIFGAS---EVGG------
 
69
YOR262W                KLTETIKELVSDFNLVSFEVLSVDDKESMINLQGVIDKANGYIFGAS---EVGG------
 
70
Smik_Contig1103.1      KLTDAIKELVSDFNLVSFEVLSVDDKESMINLQGVIDKANGYIFGAS---EVGG------
 
71
Skud_Contig1703.7      KLTETIKELVSDFNLVSFEVLSVDDKESMINLQGVIDKANGYIFGAS---EVGG------
 
72
Sbay_Contig635.43      KLTETISELVSDFNLVSFEVLAVDDKESMINLQGVIDKANGYIFGAS---EVGG------
 
73
Scas_Contig692.20      KLTETISELVSDFNLVSFEVLAVDDKQSMINLQSVVDKANGYIFGAS---EVGG------
 
74
Sklu_Contig2277.4      RLTETISELVSDFNLVSFEVLCVDDKQSMINLQSIVDKANGYIFGVS---EIGG------
 
75
AAL117C                RLTEAIGEVVSDFNLVAFEVLCVDDKQSMINLQSAIDKANGYIFGAS---EVGG------
 
76
SPAC144.07c            DLNKAICELVEDFNLVSFEVVAVENKASMLRVLRKIDQAGGYAYGST---EIGG------
 
77
MG06110.4              KLNRAVANLIEDFGLVRFEVLAVENKKSMMHLLRVLDRANGYVFGGA---EGAN------
 
78
NCU09745.1             KLNEAVANMVEQFGLVSFEVLAVENKKSMMHLLRVIDRASGYVFGGA---EGTN------
 
79
FG05298.1              KLNEAIANLIESYGLVRYEVLAVENKKSMMHILRVIDRAGGYVFGSA---EGAN------
 
80
AN2438.1               ALNNAIITLIEEFGLVGFETLAVEDKKSMMNLLRAIDRASGYVFGPA---EGAN------
 
81
183.m01790             KLNKALVELIEGFSLVGFQTLAVEDKESMLNIVRLVDKMTGYIFIPSGDLEGTNAINTQA
 
82
                        *. ::  ::. :.** ::.:.*::* **:.:   :*:  ** :  :   *  .      
 
83
 
 
84
Spar_21273             --DTVWAEASREGA-LLANYDIQDRWIDNKEKYDKEEEEKRAALLKEQELQNKAVDVNEE
 
85
YOR262W                --DTVWAEASREGA-LIANYDIQDRWIDNKEKYDKEEEEKRTALLKEQELQNKAVDVNEE
 
86
Smik_Contig1103.1      --DTVWAEASREGA-LLTSYDIQDRWIDNKEKYDKEEEEKRVILLKEQELQNKAVDVNED
 
87
Skud_Contig1703.7      --DTVWAEASREGA-LLENYDIQDRWIDNKETYDKEEQEKRASLLKEQELQNKTVDVKEE
 
88
Sbay_Contig635.43      --DTVWAEASREGA-LLASYDIQDRWIDNKEKYDKEEQEKRAAMVKEQELQNKEVNVDEE
 
89
Scas_Contig692.20      --DTVWAEATREGA-MMVNYDIQDRWIDNKEKYDEEERKRQEEQAKEQNMQEKEVDVDNE
 
90
Sklu_Contig2277.4      --DTVWAEATRQGS-AIANYDIQERWIDNKDMYDREEQEKREQLLKEEELQNKEVDVDKG
 
91
AAL117C                --DTVWAEATRQGT-AAIEYDIQDRWIDNKDFYDKEEEARRKKLLEEHELLEKEVDVNQD
 
92
SPAC144.07c            --DAVWVNAVRQGGDPLQGISPQERWIDKKEEYDK----------YEWELEQK--STMDE
 
93
MG06110.4              --DTVWQVAMRNEGSLMGVQDIQERWIDNKEAYDEMEQREWEEQVKAQEAMAEADAAAAE
 
94
NCU09745.1             --DTVWQVAMRNESSLPDALDIQERWIDSKEEYDEMERKEEEEQEKLRAEQARAAEEAGL
 
95
FG05298.1              --DTVWSVAMRNESSMLGVQDIQERWIDQKVEYDQMEREAEEEQARIQEEQAMEMEQSQP
 
96
AN2438.1               --DSVWQVAVREGMGSMDIRDIQERWIDAKDEYDELERRQREEEIKNHQQAATYQAGNED
 
97
183.m01790             LFGSAMSSAKLTGRAGGDVRDVQERWMDNKEAWDEWEKKEWKREAEIRAQMGTGIPEGMK
 
98
                         .:.   *           . *:**:* *  :*.                         
 
99
 
 
100
Spar_21273             DEWENALKEWEEKQGTDFVR--------------
 
101
YOR262W                DEWENALKEWEEKQGMDFVR--------------
 
102
Smik_Contig1103.1      DEWESALKEWEEKQGMDFVR--------------
 
103
Skud_Contig1703.7      DEWENALKEWEEKQDTEFVR--------------
 
104
Sbay_Contig635.43      DEWENALNDWEEKQGTDFVR--------------
 
105
Scas_Contig692.20      DEWEKALKDWEEKQGTGYVR--------------
 
106
Sklu_Contig2277.4      DEWENALKEWEEKQGMSYVK--------------
 
107
AAL117C                DEWERAVKEWESQHSVNFVK--------------
 
108
SPAC144.07c            DENEG-----------------------------
 
109
MG06110.4              -EG-----DDDLMGGPGAR---------------
 
110
NCU09745.1             GDGSVPGVAPQFTSGSGIRVTLSLVAAFTKYSDL
 
111
FG05298.1              PPAPTGGMDPDFGDMTVPKDSGIKVVRK------
 
112
AN2438.1               DDDDN---DYEFGRRMPVPDSGVKVMRK------
 
113
183.m01790             GGED--------AESTGI----------------
 
114