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Viewing changes to t/data/map_hem/HEM1-HEM15.fa

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM1-HEM15.fa
 
1
>SGD_Scer_YDR232W HEM1 "5-aminolevulinate synthase, catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p"
 
2
ACTGAAAAAAAAACCTAAGTACTGTTATGATTATTGAGGGACAACAACTAGCTCTATTAG
 
3
TTTTCCTTCCAACCAAACTTATATGGGCAATATATAGGAAAGAAAAAAGAAAAGAGTGGG
 
4
ATAAAAAAAAAAGAAACGCGAGCTGAGAAGGGAAGGCGTGTAAAGGAAGAACGGTTGAGA
 
5
GACAGCAGAGCAGGGTGCAACACACAACCGAATAGAGTATCAGCTGACGGAATGGAGAAG
 
6
TTTGGTATGATGCAAACGTTGTATTTCTAACAACGCATGGATCAGAACAATGGGCAAGGC
 
7
AAGATGAAAAATTTCCGTTCCTGCTCTTTCTTCATATATGAACAATGACCAAAAAGCGCC
 
8
CGCGGCCGCAGACCAATGAGCGACGAAGGCGGCCTTTCCGAGCGGTAGGGTAAGCCGTGC
 
9
AGGCAAGCTTATTATAGCACCGTCGGGGGTACCACCACTATATCAAACTCCACTGCTCGG
 
10
TAAAGCATTGTAGTGAAG
 
11
>MIT_Spar_c117_4603 YDR232W 5' untranslated region, Contig c117 17441 - 19440, 2000 bp (revcom)
 
12
ACTGAAAAAAAACCAAGTACTGTTGTGATTATTGAGGGACAACGGCTAGCTCTATTTGTT
 
13
TTCCTTCCAACCAAACTTATATGGGCAATATATAGGAAAGAAAAAAGAAAAGAGTAGGAT
 
14
AAAAAAAGAAACGCGAGCTGAGAAGAGAAGGCGTGTAAAGGAAGAACGGTTGAGAGAGAG
 
15
CAGAGCAGGGTGCAACACACAACCGAATAGAGTATCAGCTGACGGGATGGAGGAGTTTGG
 
16
TACGATGCAAACGCTATATTTGTAGCAACGCATGGGTCAGAACAATGGGCAAGGCAAGAT
 
17
GAAAAATTTCTGTTCCTGCTCTTTCTTCATATATGAACAATGACCAAAAAGCGCCCGCGG
 
18
CCGCAGACCAATGAGCGACGAAGGCGGCCTTTCCGAGTGGTAGGGTAAGCCGTGCAGGCA
 
19
AGCTTATTATAGCACCGTCGGGGGGACCACTATATCAAGTTCCACAGCACGGTGAAGCAT
 
20
TGCAGTATAGTTCACAGC
 
21
>MIT_Smik_c228_4055 YDR232W 5' untranslated region, Contig c228 4702 - 6701(revcom), 2000 bp (revcom)
 
22
ACCGAGAGAAAAACTAAGTAGTGATATGATTATTGAGGACTAATGACCAGCTTTGTTTGT
 
23
TTTTTCTTCCAACCTAACTTATATGGGAAATATATAGGACAGAAAAAAGAAAAGAGCACG
 
24
AAAAAAAAGAAATGCGACCTGAGAAGGGAGGACGTGTGAAGCCAGAACGGTTGAATGACA
 
25
GTAGAGGAGGGTGCAACACAACCGAGTAGAGTACCAGCTGACGGAATGGAGGAGTTTGGT
 
26
ATGATGCAAAAGTGATGCTTTTAGCAACGCAACATTGAATTAGAACAATGGGCAAGGCAA
 
27
GATGAAAATTTCCGTTCCTGCTCTTTCTTCATATATGAACAATGACCAAAAAGCGCCCGC
 
28
AAGCGCAGACCAATGAGCGACGAAAGCGGCCTTTTGAAGGGTAGGGTAATCCATGCAGGC
 
29
AAGTTTATTATAGCACCGTCGGGGGGAAGCATTATATCAAACTCCACAGTACAGCGTAAC
 
30
ATTGCTGTATAGGCTACA
 
31
>WashU_Skud_Contig2069.5 YDR232W 5' untranslated region, Contig c2069 5476 - 7475, 2000 bp (revcom)
 
32
ACTGAAAATAATCCGAGTCGTGCTACTGTGAATATTGAGAATAGGGACTAGCTCTATTTG
 
33
ATTTTTCTTCCAACCAAACTTATATGGAAAATATAAAGGAAAGAAAAAAGAAAAGAATAG
 
34
GAAAAAAAAAAAGAAACGCGAGAGAAGAGAACCGTGTGGAGGGAAGAACGGTTGAGAGAC
 
35
AGCAGAGCACAGCGCAACACAACCGAGTAGAGTACCAGCAGACGGAGTGGGTAGTTTGGT
 
36
ACAGTGTAAAAGCTATATTTCCACCAACGCAACACTGGATCGGAACAATGGGCAAGGCAA
 
37
TGTGAAAAATTTCCGTTCCTGCTCTTGCTTCATATATGACAATGACCAAAAAGCGTCCGC
 
38
GGCCGCAGACCAATGAGCGACGAAGGCGGCCTTTCGTAGCAGCAGGGTAAGCCGCGCAAG
 
39
CAAGTCCGTCATAACACCGTCGAAGGGGCACCACTATATCAGCTCTTCAGCATGGTAGGC
 
40
CATTACAGCACAGTCTTG
 
41
>WashU_Sbay_Contig461.5 YDR232W 5' untranslated region, Contig c461 4000 - 5999, 2000 bp (revcom)
 
42
ACTAAAAAGTCCAAGTGGTGCTGTTATTATTGAGGATAGCAACTAGCTTTATTTGTTTTT
 
43
TCTTCCAACCAAACTTATATGGAAATCAAAGGAAGGAAAAAAAGAAAAGAACAGGAAGAA
 
44
AAAAAAGAAACGTGAGCTGCCGAAAGGAGAGCGTGTGGAGGGAAGAACCGTTGAGAGACA
 
45
ACAGAGCAGGGTGCAAACCGATTAGAGTACCAGCAGACGAGATGGGCGATGTGGTACGGT
 
46
GCAGAAGGTGTGGTTCCAACAGCGCAGCACCGGGACAGAACAATGGGCAAGGCAAGATGA
 
47
AAAATCTCCGTTCCTGCTCTTGCTTGATATATTAACAATGACCAAAAAAACGCCGGCGGG
 
48
CGCAGACCAATGAGCGACGAAGACGGCTTTTGGGCGGGGCAGGGTAAGATGGGACAGGCA
 
49
AGGTCCGCTATAGCACCGTCGAGGGGGACCGCTATATCAGCTCCCAGTACATTGCAGCAC
 
50
ACTCTATAGCTAGTCAAA
 
51
>SGD_Scer_YOR176W HEM15 "Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; Yfh1p mediates the use of iron by Hem15p"
 
52
TCTTTAAACGTTCTTTTTTTTACTGCTAAATTTGTCCAAATAGCAGGTATGTGTTAAATA
 
53
TTTCTGTACTTCTTGTAAACCGACTCAAGTGGAACACGAGAATTTACGCTTGTTTGGTGT
 
54
CAAGCCAAGAGTGACCTTGACCGACCAAAAGTATTCCTTCGCGTCCTCCTTCTTCAATCC
 
55
CATATCCCCTACGAAAAAAAGCAGCATGAGAAAACGAAGGGCAGCAACTCCTTCGTCATA
 
56
TAAGGCTTACGGTGACCATTGAAGATTGGGCATGTCTAACGGCTATTGCCAGCGGAGATG
 
57
TTTCAAGGCATCCTACACATGCTACATATTTGTAATTATTTTACTGAGTTTGTGTATATA
 
58
AAAAACTTTTTTAAAAAAAAAAAATGGCCAGCATCCTCTTTCATGTAAAGCTGTTGAACC
 
59
TTCCTGAAATTTACTTCTAAAATTGTTCAGTAAAACTGCTTGTTAAAAGTGCGAAGAGTT
 
60
CTTTTTTAGCTTTTTTTGTCCTGCTGTTGAGCTGTTTTGCTTTACTGTTCAACAAAACAT
 
61
TGAAGATCTTTCACATTGCGCGTCGAAACCACAAACCGTCGAAAACAATGGTCATCTAAA
 
62
TAAAGGGTTCTTATTAAACAGATTTAAAGCCAAGGACAAAATACAGGCACAGGTCAAGCA
 
63
AGAAGACAAACCGCATACGCCAAGACAAACCGTGGTGATTTAATTCTGCTGCTGATCGCT
 
64
TCCAACA
 
65
>MIT_Spar_c278_20970 YOR176W 5' untranslated region, Contig c278 32746 - 34745, 2000 bp (revcom)
 
66
TCTTCAAACGTTCTTTTCCTACTACTAAGCTTTTCAATAAATAGCGGGTATATGCTAAAT
 
67
ACTTCTTTGCTTCTTGTACGACCTACTTAATTGAAATACGGATATTTTTGCTTGCTTGGT
 
68
GCCAAACCAAGAGTGACCTTGACCGACTAAAAGTATTCCTTCGCGTCCTCCTTCTTCAAT
 
69
CCCATATCCCCTACTGAAAAAAGCAGCGTGCGAAAATGAAGGGCAGCAACTCCTTCGTCA
 
70
TATAAGGCTTAGGTAATCTTTCAAGGTCAGGTATATCCAGCTGTCGTTACGAGTAGAGAT
 
71
ATTTCAAGCTGTCCTGCACATGCTACATATTTGTGATTATTTTTATTGAGTTGCGTATAT
 
72
AAAAAAACAATCTAAAAAAAAAAAAAATGGCCAGCATCTTCTTCCATGTAAAGCTGTTGA
 
73
ACCTTGCTAAAATCTATTACTATAATTGTTCAGTAAAGTTGCTTGTTAAAAATGCGAAGA
 
74
GTCTTTTTTAGCTTTTTTTGCCCTGCTGTTGAGCTGTTTTGCTTCACTGTTCAACAAAAC
 
75
AGTGAAGATCTTTCGAATTGCGCGTCGAAACCACAAACCGTCGAAAATAATGGTCATCTA
 
76
AATAAAGGGTTCTTATTTGAACAGATTTAAAGCTCAAAGACACGATACAGGCACAGGTCC
 
77
AGAAAGAATACAAAACGCAAACGCCAAGACAAATTGTGGTAATTTCATTCTGCTGCTGAT
 
78
CACTGCC
 
79
>MIT_Smik_c935_20455 YOR176W 5' untranslated region, Contig c935 1803 - 3802(revcom), 2000 bp (revcom)
 
80
TCTTGAATTGCAATTTTCTACTACTGAAGTTACCAACAATTAGCAAATATGTGATGAGTC
 
81
CTTTTTACGTTCTTGTATAACCTAAGTTAAATACAAAGGTTTATGCTCCTTTAATGATCA
 
82
GACCAACAGTGATCTTGGCCGACCAAAAGACTCCTTCGCGTCCTCCTTCTTCAAGTCTCA
 
83
TATCCCCTACCAGAAAAAGTAGCAGGCGAAAATAAAGAGCAACTGCTCCCCCCCATATAG
 
84
AGCTTACCATAATTTCTCAAGGAAAGGTATCTCCAGTTGTCGTAAAGAATAAAGAAGTTT
 
85
CAACGTGTCCTGCATGTTCTACAAATTTGCAATTGACTTTACTAAGTTGCATATATAAAA
 
86
CTTGTATTAGATAAGTTAGCCAGCATTTTCATTCAAGCTAAGATGTTGAATATGCCAAAG
 
87
CACATTGCTGAAATTAATCAGTAAAGCTGCTTGCTGAAAGTGGAAATATTTTCAGCTTTT
 
88
TTTGCTCTGCTGTTGAGCTGTTTTACTTCATTGTTCAACAAAACAATAGAGTTCTCTCCA
 
89
ATTGCGCGTCAAAACCACAAACCGTCGAAAATAATGATCATCTAAATAAAAGAGTTCACG
 
90
TTTTCACATATTTAAAGTTGAAATACTCCATACAGGCACAGGTCTAACAAGAAGACAACG
 
91
CATTCGATAAAACTAATCGTGGTAATTTTTATATCGCTGCTAGCCACTACCAACAATGTA
 
92
CAATTTT
 
93
>WashU_Skud_Contig2050.4 YOR176W 5' untranslated region, Contig c2050 12271 - 14270(revcom), 2000 bp (revcom)
 
94
TCTTAGTTTATAGCTTTTCTACTACTCTGGTCATAAACGAACAGAAGATAAGCAAGAAAT
 
95
CTTTTTTTCCTTCTTTTACGGTCTATTCAAGTGAAGCACGGGGATTCCCGCTTGTTTAAT
 
96
AATCAGACCAACAATGATATTGACCGACCAAAAGAAGTATTCCTTCGCGTGCTTCTCCTT
 
97
TCTGTGTCAAATCCCCTACTGAAAAAGCAGCATTGGGAAAGGAACAGCAGCTTCTCCTTC
 
98
GTCGCAGAGAGCTCGCGGTAGCATTTCATTGTCAGGTATTTATGATATTTGCTAAGAATA
 
99
ATTAAAATGTCTTCAGGTCTTGCACATACTCCTACATATTTGTAAGTATTTTACTGATTT
 
100
GAGTATATAAAAGCCGTACTAAAACTAACCAGCACCTGTAGCAAGGTGCAAAATGTTGAA
 
101
CCTTTCCGAAATTTATTGCCAGAAACCAAGAGCTAAAAGTGCTTGGTAAAAGTGAAAAGA
 
102
CTCTTTTTCAGCTGTTTTTTGTTCTGCTGTTGAGCTGTTTTGTTCCATCTGTTCAACAAA
 
103
ACAGCTTCACTGGATCTTTCAAAGTGCGCGTCGAAACCACAAACCGTCGAAAATATTGAT
 
104
CATCTAAATAAAGGGTTCTTATTTGCACAGTTTCGCATTGAAATATTCCATTCAGGCACA
 
105
GATCAACAAGAAGACAAAAAGGTATTCGAGAAGACTAATTGTGGTATTTTTACTTTGCTG
 
106
CTGACCA
 
107
>WashU_Sbay_Contig480.2 YOR176W 5' untranslated region, Contig c480 3444 - 5443(revcom), 2000 bp (revcom)
 
108
TTTCAGGGAAGCACCATGTGCACGAATTGTTCTAGAAAGCATTTTTGGTTCGTAAATTCT
 
109
CTACAACTGAACTTATTAACAAATAGCAAACAGAGAAGAAAATTTTTTTTTTCCTTCTTG
 
110
TATGGTCAGTTAGTTGAAAACACGGAGATTTTCACTTGTTTAGTAAGCAGAGCCATAATG
 
111
CTCTTGACCGACCAAAAGAAGTATTCCTACGCGAGCTCCCTCTTCAAGTGCCAAATCCCC
 
112
TACTGAAAAAAGCAACATGAGAAGCAAAGAGATGCCTCTCGCCATGCAGGGCTTGCGGTC
 
113
ATGTTTTCTACGTTCAATTGATTTTGTTACAGCTGAAAGATGTTTATAAAACTGTCTTGC
 
114
ATATGCTCTATTTACTTGTAAACAATTTTATTAAGTTGCGTATATATGATCGTACTAAAA
 
115
ATTGGCTGGCGCGTTCTCCAGGCAGAGTTGGTTGAACCTTGCTCGAATTGATAGCTCAAA
 
116
GTGGAGAGACTCTTTTTTAGCTGTTTTTTGTTCTGCTGTTGAGCTGTTTTGCTCCACCTG
 
117
TTCAACAAAATGGCAGAGATCTTTCGAAGTGCGCGTCGAAACCACAAACCATCAAAAATA
 
118
TCGACCATCTAAATAAAGGGTTCTTGTTTGAATAAATATCAGGCGAAGCTCTTCATACAG
 
119
GCACAGGTCAGATAAGAAGACAATTCGAATTCGAGAAGGATATTCGTGGTATCTTTAATC
 
120
TGCTGCT