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Viewing changes to t/data/map_hem/HEM15.ups.fa_.revcom

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM15.ups.fa_.revcom
 
1
>SGD_Scer_YOR176W HEM15 "Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; Yfh1p mediates the use of iron by Hem15p"
 
2
TGTTGGAAGCGATCAGCAGCAGAATTAAATCACCACGGTTTGTCTTGGCGTATGCGGTTT
 
3
GTCTTCTTGCTTGACCTGTGCCTGTATTTTGTCCTTGGCTTTAAATCTGTTTAATAAGAA
 
4
CCCTTTATTTAGATGACCATTGTTTTCGACGGTTTGTGGTTTCGACGCGCAATGTGAAAG
 
5
ATCTTCAATGTTTTGTTGAACAGTAAAGCAAAACAGCTCAACAGCAGGACAAAAAAAGCT
 
6
AAAAAAGAACTCTTCGCACTTTTAACAAGCAGTTTTACTGAACAATTTTAGAAGTAAATT
 
7
TCAGGAAGGTTCAACAGCTTTACATGAAAGAGGATGCTGGCCATTTTTTTTTTTTAAAAA
 
8
AGTTTTTTATATACACAAACTCAGTAAAATAATTACAAATATGTAGCATGTGTAGGATGC
 
9
CTTGAAACATCTCCGCTGGCAATAGCCGTTAGACATGCCCAATCTTCAATGGTCACCGTA
 
10
AGCCTTATATGACGAAGGAGTTGCTGCCCTTCGTTTTCTCATGCTGCTTTTTTTCGTAGG
 
11
GGATATGGGATTGAAGAAGGAGGACGCGAAGGAATACTTTTGGTCGGTCAAGGTCACTCT
 
12
TGGCTTGACACCAAACAAGCGTAAATTCTCGTGTTCCACTTGAGTCGGTTTACAAGAAGT
 
13
ACAGAAATATTTAACACATACCTGCTATTTGGACAAATTTAGCAGTAAAAAAAAGAACGT
 
14
TTAAAGA
 
15
>MIT_Spar_c278_20970 YOR176W 5' untranslated region, Contig c278 32746 - 34745, 2000 bp (revcom)
 
16
GGCAGTGATCAGCAGCAGAATGAAATTACCACAATTTGTCTTGGCGTTTGCGTTTTGTAT
 
17
TCTTTCTGGACCTGTGCCTGTATCGTGTCTTTGAGCTTTAAATCTGTTCAAATAAGAACC
 
18
CTTTATTTAGATGACCATTATTTTCGACGGTTTGTGGTTTCGACGCGCAATTCGAAAGAT
 
19
CTTCACTGTTTTGTTGAACAGTGAAGCAAAACAGCTCAACAGCAGGGCAAAAAAAGCTAA
 
20
AAAAGACTCTTCGCATTTTTAACAAGCAACTTTACTGAACAATTATAGTAATAGATTTTA
 
21
GCAAGGTTCAACAGCTTTACATGGAAGAAGATGCTGGCCATTTTTTTTTTTTTTAGATTG
 
22
TTTTTTTATATACGCAACTCAATAAAAATAATCACAAATATGTAGCATGTGCAGGACAGC
 
23
TTGAAATATCTCTACTCGTAACGACAGCTGGATATACCTGACCTTGAAAGATTACCTAAG
 
24
CCTTATATGACGAAGGAGTTGCTGCCCTTCATTTTCGCACGCTGCTTTTTTCAGTAGGGG
 
25
ATATGGGATTGAAGAAGGAGGACGCGAAGGAATACTTTTAGTCGGTCAAGGTCACTCTTG
 
26
GTTTGGCACCAAGCAAGCAAAAATATCCGTATTTCAATTAAGTAGGTCGTACAAGAAGCA
 
27
AAGAAGTATTTAGCATATACCCGCTATTTATTGAAAAGCTTAGTAGTAGGAAAAGAACGT
 
28
TTGAAGA
 
29
>MIT_Smik_c935_20455 YOR176W 5' untranslated region, Contig c935 1803 - 3802(revcom), 2000 bp (revcom)
 
30
AAAATTGTACATTGTTGGTAGTGGCTAGCAGCGATATAAAAATTACCACGATTAGTTTTA
 
31
TCGAATGCGTTGTCTTCTTGTTAGACCTGTGCCTGTATGGAGTATTTCAACTTTAAATAT
 
32
GTGAAAACGTGAACTCTTTTATTTAGATGATCATTATTTTCGACGGTTTGTGGTTTTGAC
 
33
GCGCAATTGGAGAGAACTCTATTGTTTTGTTGAACAATGAAGTAAAACAGCTCAACAGCA
 
34
GAGCAAAAAAAGCTGAAAATATTTCCACTTTCAGCAAGCAGCTTTACTGATTAATTTCAG
 
35
CAATGTGCTTTGGCATATTCAACATCTTAGCTTGAATGAAAATGCTGGCTAACTTATCTA
 
36
ATACAAGTTTTATATATGCAACTTAGTAAAGTCAATTGCAAATTTGTAGAACATGCAGGA
 
37
CACGTTGAAACTTCTTTATTCTTTACGACAACTGGAGATACCTTTCCTTGAGAAATTATG
 
38
GTAAGCTCTATATGGGGGGGAGCAGTTGCTCTTTATTTTCGCCTGCTACTTTTTCTGGTA
 
39
GGGGATATGAGACTTGAAGAAGGAGGACGCGAAGGAGTCTTTTGGTCGGCCAAGATCACT
 
40
GTTGGTCTGATCATTAAAGGAGCATAAACCTTTGTATTTAACTTAGGTTATACAAGAACG
 
41
TAAAAAGGACTCATCACATATTTGCTAATTGTTGGTAACTTCAGTAGTAGAAAATTGCAA
 
42
TTCAAGA
 
43
>WashU_Skud_Contig2050.4 YOR176W 5' untranslated region, Contig c2050 12271 - 14270(revcom), 2000 bp (revcom)
 
44
TGGTCAGCAGCAAAGTAAAAATACCACAATTAGTCTTCTCGAATACCTTTTTGTCTTCTT
 
45
GTTGATCTGTGCCTGAATGGAATATTTCAATGCGAAACTGTGCAAATAAGAACCCTTTAT
 
46
TTAGATGATCAATATTTTCGACGGTTTGTGGTTTCGACGCGCACTTTGAAAGATCCAGTG
 
47
AAGCTGTTTTGTTGAACAGATGGAACAAAACAGCTCAACAGCAGAACAAAAAACAGCTGA
 
48
AAAAGAGTCTTTTCACTTTTACCAAGCACTTTTAGCTCTTGGTTTCTGGCAATAAATTTC
 
49
GGAAAGGTTCAACATTTTGCACCTTGCTACAGGTGCTGGTTAGTTTTAGTACGGCTTTTA
 
50
TATACTCAAATCAGTAAAATACTTACAAATATGTAGGAGTATGTGCAAGACCTGAAGACA
 
51
TTTTAATTATTCTTAGCAAATATCATAAATACCTGACAATGAAATGCTACCGCGAGCTCT
 
52
CTGCGACGAAGGAGAAGCTGCTGTTCCTTTCCCAATGCTGCTTTTTCAGTAGGGGATTTG
 
53
ACACAGAAAGGAGAAGCACGCGAAGGAATACTTCTTTTGGTCGGTCAATATCATTGTTGG
 
54
TCTGATTATTAAACAAGCGGGAATCCCCGTGCTTCACTTGAATAGACCGTAAAAGAAGGA
 
55
AAAAAAGATTTCTTGCTTATCTTCTGTTCGTTTATGACCAGAGTAGTAGAAAAGCTATAA
 
56
ACTAAGA
 
57
>WashU_Sbay_Contig480.2 YOR176W 5' untranslated region, Contig c480 3444 - 5443(revcom), 2000 bp (revcom)
 
58
AGCAGCAGATTAAAGATACCACGAATATCCTTCTCGAATTCGAATTGTCTTCTTATCTGA
 
59
CCTGTGCCTGTATGAAGAGCTTCGCCTGATATTTATTCAAACAAGAACCCTTTATTTAGA
 
60
TGGTCGATATTTTTGATGGTTTGTGGTTTCGACGCGCACTTCGAAAGATCTCTGCCATTT
 
61
TGTTGAACAGGTGGAGCAAAACAGCTCAACAGCAGAACAAAAAACAGCTAAAAAAGAGTC
 
62
TCTCCACTTTGAGCTATCAATTCGAGCAAGGTTCAACCAACTCTGCCTGGAGAACGCGCC
 
63
AGCCAATTTTTAGTACGATCATATATACGCAACTTAATAAAATTGTTTACAAGTAAATAG
 
64
AGCATATGCAAGACAGTTTTATAAACATCTTTCAGCTGTAACAAAATCAATTGAACGTAG
 
65
AAAACATGACCGCAAGCCCTGCATGGCGAGAGGCATCTCTTTGCTTCTCATGTTGCTTTT
 
66
TTCAGTAGGGGATTTGGCACTTGAAGAGGGAGCTCGCGTAGGAATACTTCTTTTGGTCGG
 
67
TCAAGAGCATTATGGCTCTGCTTACTAAACAAGTGAAAATCTCCGTGTTTTCAACTAACT
 
68
GACCATACAAGAAGGAAAAAAAAAATTTTCTTCTCTGTTTGCTATTTGTTAATAAGTTCA
 
69
GTTGTAGAGAATTTACGAACCAAAAATGCTTTCTAGAACAATTCGTGCACATGGTGCTTC
 
70
CCTGAAA