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Viewing changes to t/data/map_hem/HEM12-HEM14.fa

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM12-HEM14.fa
 
1
>SGD_Scer_YDR047W HEM12 "Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents"
 
2
AGCGTTATAACCTGTTCTTTGCTTTATTTTTTTTTTTTTTGTTCTTCCTTTTCTCGAAGA
 
3
GAGCTTACCAAACACAATTCTGAGATAATGCTTGATGAATTGAAGAACCTATCGATCACT
 
4
CTATGTTACCTTCGTCTGGAACATCACTAATTCGAGCGGTAAAGATGAAAATGGCAGAAC
 
5
ATTTCGCTGGCAAAATTAAAACTCTTGCCTCATTTTTTTTTGCTTTCCTCTCCTGCCGCC
 
6
AAAAACCCCGAACCCTGTCCTGTATATACGAGAAACATTGAAAAAGATCGTGTATGATAG
 
7
CGCCAAGATGGCGGATAAACTAACACTATTGACAGGTTGAGGCCAAGGATATATTACTTG
 
8
CTAACAGAAAGAGATACTGTCACCACAATTGCCCGCGTACGTATACTACAACATGTTCTC
 
9
TATATATCACCCACTCTTTCGCAGTGCTACGTACGCCAAAAACGCGCGCATGGAAGTAAA
 
10
GAAGTTTTTTCTTTTAAGAGCGAAGCTCCATTAAAAGCCTTGAATATAAACTAGTGCGAA
 
11
GTAGTATGATCCGAAGACACCAATTGCTGGTGCAGCATAGGAATATGTGGCGTCCGAAAA
 
12
AGAGCCTTTAACAATCCACGGCGAAACAAGGCACCGCTGTGCATTTAAAACATGCCGTTC
 
13
CCGTACCAAGTTATATTGTTACGGATGAATCCAAAATAATTTGTTAAAAAATGCTGCCGT
 
14
TCCGTCCCATTGAGTTTTATTTTCCTTCTCATGGCACCTTCTTCGTTTCTTCATCCTGCA
 
15
TTAGACTTACTAGTGTGCTTGCCGGATGCGTGCTTTTTTTTTCCGGCCGACACATATCGC
 
16
TGAGCTGGAAGGACACCTTTTAATGTAGCCGTGCATGCGGCTCCGCGAAAAGAGCTCTGC
 
17
TATATTTCTCTACCTGAACTTCGAGCCGCGATCAACGAAAGCTCTCATCCAAGGCTCGTT
 
18
TTTCTTGACAGAAGCATGACAGTAAAATATGCGGTCATTT
 
19
>MIT_Spar_c130_3923 YDR047W 5' untranslated region, Contig c130 9341 - 11340, 2000 bp (revcom)
 
20
AGCGTTATGATGTGTTATTTGCTTTTATTTTCTTCTTTCTTTGTCTCGAAGATAACCTAG
 
21
CAAACACAATTCTAAGAAAATTCTCGATGAATTGGTTGTCAGCGCTTCCTATTTACTCTA
 
22
TGTCCACTTCGTTTGAAACATCAGTGGTTCGAGCAGTAATGACAAAAAGGGCAGAACATT
 
23
TCGTTGGCAAAATTTAAACTCGTGCCTCTCATTTTTTTTACTTTTCTCTCCTGCCACCAA
 
24
AACCCCGAACCCTGTCCCGTATATACGAGGAACATTGAAAAAAAATCGTGTATGGTAGCG
 
25
CCAAGATAGCGAATAAACTATCAGTATTGGCAGGGTGAAGCTAAGGATATGTTGTTTGCT
 
26
AACAAAGGGAAATGCTTTCGTTATAATCGCCCGCGTGCGTCTACTAAAATATGATCTATA
 
27
TATACCACCCAGTCTATTGCAGTGTTACGTACATCAAAATGCGCGCATGTAAGTGAACAA
 
28
GTTTTTTTTGTTTAAAGAGCGATTTTCCAATAAAGGCTTTGGATATACACTGGTGCAAAA
 
29
TATATGGTCAATGACGCCAATTACTGGTGTAGCATGAGAATACGTCGTCCGAAAGAGTTT
 
30
TTTTTTACAAACTACGGCAAAGCAAAGCACCACTGGCGCAATTCAAAACATGCCGTCCCC
 
31
GTACTAAGTTATGTACGTTATTATGGACGGATCCAAAATTATACTCTAAAATGCTGCCGT
 
32
TCCGTCCCATTGAGTTTTATTTTCCTTCTCGTAGCACCTTCTTCGTGTCCTTTCCTTCTT
 
33
CTGCATTAGGCTTACTAGCGTCCTTTCCTTGCCGGATGCGTGCTTTTTTTTTCCGGCCGA
 
34
CAAATCTCGCTGAGTTGGAAAGACACCTTTTATATAGCCGTACGTGCGGCTCCTCGAGAA
 
35
AGGCCCTGCTATATTTCACTAGCTGATCCTCGAGCTGCGATCAACGAAAGCCCCATCCAA
 
36
AAGGCTCCTTTTTCTTCAAAGAAGCATGACAGTAAAATAT
 
37
>MIT_Sbay_c896_21277 YDR047W 5' untranslated region, Contig c896 2230 - 4229(revcom), 2000 bp (revcom)
 
38
AGTGTTAACAGTATCTTTTGCCTTTTTTTATTCTAATAGCTACCCCAGGAATCACTATTT
 
39
AGCAAAGATCGTTTGCAAATTGGCCGTCAGTACGTTCTAAGTTCTTTAGAACATCATTGG
 
40
CTCGAGCATTAGTGACACGAATAGGAAAGCATTTCGTTGACAAAAATAAAATTGTTTCTT
 
41
TATTTTTTCCCTCTTTTCCATGGCGTCAAAAAACCCCGAACCCTGTATAAACGAGGAAGC
 
42
TGCATGGTAGCGCCAGAAAAGGCAGATAACCTTTAACAGTGCTGACAGAACAACGTCAAA
 
43
CATGTGCGGATAATGCCTTCGCTGACGGCAAGAAATTATATACGCCTCGAAACTGTAGAA
 
44
CGTCTTTTGTGCCGCTTGGTAACAAATAAACCTAGCCGGGGCCAGAATTTCACCCGTACA
 
45
TACTTACTGTTACATACTGCATGCACGCTACGCATTCTCACCGAACATCGAATCTGCCTG
 
46
CAGAAGCGAAGAAAAGCAAGTCTTCGAAGAGCAAGCTTACATCCATCGTGTTGAACACAT
 
47
ATGCCCAGCAAAGGGATCGGATGACGCCCAACTAACATTGGAATTTGTGACGCAAGGCTG
 
48
AAAGGCACTTCTCTATAGCCCACGGTGAAGCCTTACGCTATTGACAAGACAAAACATGCC
 
49
GATCCAAGCCAGGCGAAACGGGCCTAGCACTACGCAGCCAAACACTGGCGTTCCGCCCGT
 
50
CCCATCCAGTTTCATTTCTTATTTCGTTCTGCCTTGGGCCTAGCAGCGTGCTTGCCGGAT
 
51
GAGTTTTTTCCATTTTCCTACCGGCTCATCTCGCTAAGCTGAAAGGTCAGTTTTATAGCC
 
52
GTGTGCGCGGCATCGAGAGACAGGTTCAGCTAATGATATTTGCCTAATTCTCGAGCTGAG
 
53
GCCAATGAAGGCAGCTTCCAGGGCTCGTTTCTGCTCGGGAAAAAGCATACCACACATTTG
 
54
CACGGCTTTTATGTGCCATAGTGCCACCACTAGCCCCCAG
 
55
>WashU_Skud_Contig1362.1 YDR047W 5' untranslated region, Contig c1362 1 - 761, 2000 bp (revcom)
 
56
AGTGTTGATGGTATCTTTTGATTTTTTCTAGATTGGTAGCAAGCTCAATTGGCACAGCTC
 
57
TAAAAAAAGCCTTGTGAATTGGATAGTACCTTCTTTCGTTTGGAACATTACTGCTTCGAG
 
58
CAATAAACATACGAAAGGCAGAACACCTCGTTGACAAAACTGAAACTATTTCTTCAATTT
 
59
TTTGGCCTTTTTTCCTGCTGCCAAAAAACCCCGAATCATGTAGAAGCGAGAAGTAAAACA
 
60
GAGGAAGTGTATGGTAGCGCCAAGGAAAACGGGCAATACTTAGAAAGAATGACAGAGCTC
 
61
AGCCAAGTGTAAGCTAAGTGTTGACAAGGGAAGGTACATTGGGCCCCGAAAAAATTTGCT
 
62
AATGCTCGAAGAGCTCTCAATCAATCACCCACATATATGTACTACAGTATATTTATACTT
 
63
TCCACGCAGTCTCACGCAGTGCCACCTTCATCACCATGCGTGTAACTAATCGAGCAAGCT
 
64
GTTTTACGAAGGGCAGCTTTCCTATAAGCGTTTTGAACATGCATGGCTGCACTGCAATGA
 
65
GATCAGGCGACTCCAATTCCATAGCCTAGCACGGGATTAAGTAACGAGAAACTGAAAGAG
 
66
ATAATTTTACAAACCCGGACGAAGCAGAGCACTTGCTGGAACAAATCAAACATGCCGTCC
 
67
CCTACCAGCTCTCGAAGCGGGCCTAGCATTACTCGATCGAACGTTGCCGTTTAGTCTTAT
 
68
TTTCCTTTCCGTGCTGCGCTGCTTTTTTCTTGCATTGGGCT
 
69
>SGD_Scer_YER014W HEM14 "Protoporphyrinogen oxidase, a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX"
 
70
TATACAAGCTCTTTTTGGCGTTCTCAATTGCACTTTACTCGATATGTTTGAATTGGTGTT
 
71
CTTCGCGAATATCTCTATTGTTCTCTCTATTATACTATTTCTTTTTTTGAATACTCCGCG
 
72
ACTCCGAAGCAACAAAGTGTCGAAGGCAAGTTCAAAGGCGTTTTGTAACTAAACGAGCAA
 
73
TGGCAGCTTTCAATTAAAGAAAGGTTAGCGTTACTCTGTGATTTTTTTCATGTAAAAATT
 
74
CTCAAGAGAGATAAAGTTGTTAAAAAATTAAATATAGGTCTATAAAACTCGATAATTATA
 
75
ATGCATAAAAAGCTAACAATGT
 
76
>MIT_Spar_c425_6072 YER014W 5' untranslated region, Contig c425 34016 - 36015, 2000 bp (revcom)
 
77
TATTCGAGCCCTTTCCCGCGTTCCCAATTGTACCTTCCTCGATAGGATTGAATTGGTATC
 
78
CTTCGCGGATCTCTCTATTGTTCTCTCTATTATTCTTTTTCTTTTTTAAATACTCCGCGA
 
79
CTCCGAAGCAACAAAATGTCGAAGGCAAGATGAAAGGCGTTTTGCAACTAAACGAGTAAT
 
80
GGCAGCTTTTAATTAAATAACGGTCAGCATTACTCTATAACTTTTCACATAAAATCCTCG
 
81
AAGAAGGAAAAATTGATAATCAATTTACCGAAGAATGAATATAGGTCTATAAAAATTCAA
 
82
TAATTATAGATGCATAAAAAGC
 
83
>MIT_Smik_c283_5928 YER014W 5' untranslated region, Contig c283 42606 - 44605, 2000 bp (revcom)
 
84
TATTGAAGCTCTCTCCACTATTTCTTTAATCGCGCTATACTAGATATGGTTAAACTGCTA
 
85
TCTTTTGCAAATCCCTCTATTGTTCTTTCCATTACTCTTTTCTTTTTTAAATACGGACTC
 
86
CGAAGCAACAAGGTCGAAGGCAAGCTGAAAGGCATTTTACAACTAAACGAGCAATGGTAG
 
87
CTTTTGATTGAATAAATTATTATCATTATTTTGTTATTTGTCCCACGAAATTCTCGTTGA
 
88
AAGCAAGGTTCGTAAGGATTTATCAAATGTTAAATATAGATCTATAAAAATTGAATAGTA
 
89
ATAATAACAAGGGATGGTGTTA
 
90
>MIT_Sbay_c84_6418 YER014W 5' untranslated region, Contig c84 10802 - 12801(revcom), 2000 bp (revcom)
 
91
TGTCGAAGTTCTCCTTTATTCCGCTGTTTCTTACGGAATCCAGCGAGACTGTTGTCCTTT
 
92
CGCATCCTTCTATTGTTCTTCCTTATTGTTCTCGTTTTTTTTATACTCTGCGACTCCGAA
 
93
ACAACAAAATCTCGAAGGCAAGCTAAGGTAAAAATATTCACCACTAAACGAGCAATGACA
 
94
GTTATATTCAAACGTCATTCTACTTTTTTGCCAGAGAAGTCCTCACTGGAGACGAAGTTG
 
95
GTAAATGCTTTATTTATATTAAACGTAGATCTATAAAGTTTAAATAGTTTATAATGCTTA
 
96
ACAAGGGACGATGTTATCTCTT