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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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t/SearchIO/GbrowseGFF.t
 
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# -*-Perl-*- Test Harness script for Bioperl
 
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# $Id: GbrowseGFF.t 15112 2008-12-08 18:12:38Z sendu $
 
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use strict;
 
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BEGIN {     
 
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    use lib '.';
 
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    use Bio::Root::Test;
 
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    test_begin(-tests => 3);
 
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    use_ok('Bio::SearchIO');
 
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}
 
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my $in = Bio::SearchIO->new(-format => 'blast',
 
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                            -file   => test_input_file('brassica_ATH.WUBLASTN'));
 
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my $out = Bio::SearchIO->new(-output_format  => 'GbrowseGFF',
 
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                            -prefix => 'Sequence',
 
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                            -output_cigar   => 1,
 
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                            -output_signif  => 1,
 
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                            -file           => ">".test_output_file());
 
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ok($out);
 
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while( my $r = $in->next_result ) {
 
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    ok($out->write_result($r));
 
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}