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Viewing changes to t/data/map_hem/HEM12-HEM15.fa

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2009-03-10 07:19:11 UTC
  • mfrom: (1.2.3 upstream)
  • Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
Tags: 1.6.0-2
https://launchpad.net/bugs/324001
* Removed patch system (not used):
  - removed instuctions in debian/rules;
  - removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
  - uncommented test command in debian/rules;
  - uncommented previously missing build-dependencies in debian/control.
  - Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
  Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
  instead of rmdir in debian/rules (LP: #324001).

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Lines of Context:
t/data/map_hem/HEM12-HEM15.fa
 
1
>SGD_Scer_YDR047W HEM12 "Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents"
 
2
AGCGTTATAACCTGTTCTTTGCTTTATTTTTTTTTTTTTTGTTCTTCCTTTTCTCGAAGA
 
3
GAGCTTACCAAACACAATTCTGAGATAATGCTTGATGAATTGAAGAACCTATCGATCACT
 
4
CTATGTTACCTTCGTCTGGAACATCACTAATTCGAGCGGTAAAGATGAAAATGGCAGAAC
 
5
ATTTCGCTGGCAAAATTAAAACTCTTGCCTCATTTTTTTTTGCTTTCCTCTCCTGCCGCC
 
6
AAAAACCCCGAACCCTGTCCTGTATATACGAGAAACATTGAAAAAGATCGTGTATGATAG
 
7
CGCCAAGATGGCGGATAAACTAACACTATTGACAGGTTGAGGCCAAGGATATATTACTTG
 
8
CTAACAGAAAGAGATACTGTCACCACAATTGCCCGCGTACGTATACTACAACATGTTCTC
 
9
TATATATCACCCACTCTTTCGCAGTGCTACGTACGCCAAAAACGCGCGCATGGAAGTAAA
 
10
GAAGTTTTTTCTTTTAAGAGCGAAGCTCCATTAAAAGCCTTGAATATAAACTAGTGCGAA
 
11
GTAGTATGATCCGAAGACACCAATTGCTGGTGCAGCATAGGAATATGTGGCGTCCGAAAA
 
12
AGAGCCTTTAACAATCCACGGCGAAACAAGGCACCGCTGTGCATTTAAAACATGCCGTTC
 
13
CCGTACCAAGTTATATTGTTACGGATGAATCCAAAATAATTTGTTAAAAAATGCTGCCGT
 
14
TCCGTCCCATTGAGTTTTATTTTCCTTCTCATGGCACCTTCTTCGTTTCTTCATCCTGCA
 
15
TTAGACTTACTAGTGTGCTTGCCGGATGCGTGCTTTTTTTTTCCGGCCGACACATATCGC
 
16
TGAGCTGGAAGGACACCTTTTAATGTAGCCGTGCATGCGGCTCCGCGAAAAGAGCTCTGC
 
17
TATATTTCTCTACCTGAACTTCGAGCCGCGATCAACGAAAGCTCTCATCCAAGGCTCGTT
 
18
TTTCTTGACAGAAGCATGACAGTAAAATATGCGGTCATTT
 
19
>MIT_Spar_c130_3923 YDR047W 5' untranslated region, Contig c130 9341 - 11340, 2000 bp (revcom)
 
20
AGCGTTATGATGTGTTATTTGCTTTTATTTTCTTCTTTCTTTGTCTCGAAGATAACCTAG
 
21
CAAACACAATTCTAAGAAAATTCTCGATGAATTGGTTGTCAGCGCTTCCTATTTACTCTA
 
22
TGTCCACTTCGTTTGAAACATCAGTGGTTCGAGCAGTAATGACAAAAAGGGCAGAACATT
 
23
TCGTTGGCAAAATTTAAACTCGTGCCTCTCATTTTTTTTACTTTTCTCTCCTGCCACCAA
 
24
AACCCCGAACCCTGTCCCGTATATACGAGGAACATTGAAAAAAAATCGTGTATGGTAGCG
 
25
CCAAGATAGCGAATAAACTATCAGTATTGGCAGGGTGAAGCTAAGGATATGTTGTTTGCT
 
26
AACAAAGGGAAATGCTTTCGTTATAATCGCCCGCGTGCGTCTACTAAAATATGATCTATA
 
27
TATACCACCCAGTCTATTGCAGTGTTACGTACATCAAAATGCGCGCATGTAAGTGAACAA
 
28
GTTTTTTTTGTTTAAAGAGCGATTTTCCAATAAAGGCTTTGGATATACACTGGTGCAAAA
 
29
TATATGGTCAATGACGCCAATTACTGGTGTAGCATGAGAATACGTCGTCCGAAAGAGTTT
 
30
TTTTTTACAAACTACGGCAAAGCAAAGCACCACTGGCGCAATTCAAAACATGCCGTCCCC
 
31
GTACTAAGTTATGTACGTTATTATGGACGGATCCAAAATTATACTCTAAAATGCTGCCGT
 
32
TCCGTCCCATTGAGTTTTATTTTCCTTCTCGTAGCACCTTCTTCGTGTCCTTTCCTTCTT
 
33
CTGCATTAGGCTTACTAGCGTCCTTTCCTTGCCGGATGCGTGCTTTTTTTTTCCGGCCGA
 
34
CAAATCTCGCTGAGTTGGAAAGACACCTTTTATATAGCCGTACGTGCGGCTCCTCGAGAA
 
35
AGGCCCTGCTATATTTCACTAGCTGATCCTCGAGCTGCGATCAACGAAAGCCCCATCCAA
 
36
AAGGCTCCTTTTTCTTCAAAGAAGCATGACAGTAAAATAT
 
37
>MIT_Sbay_c896_21277 YDR047W 5' untranslated region, Contig c896 2230 - 4229(revcom), 2000 bp (revcom)
 
38
AGTGTTAACAGTATCTTTTGCCTTTTTTTATTCTAATAGCTACCCCAGGAATCACTATTT
 
39
AGCAAAGATCGTTTGCAAATTGGCCGTCAGTACGTTCTAAGTTCTTTAGAACATCATTGG
 
40
CTCGAGCATTAGTGACACGAATAGGAAAGCATTTCGTTGACAAAAATAAAATTGTTTCTT
 
41
TATTTTTTCCCTCTTTTCCATGGCGTCAAAAAACCCCGAACCCTGTATAAACGAGGAAGC
 
42
TGCATGGTAGCGCCAGAAAAGGCAGATAACCTTTAACAGTGCTGACAGAACAACGTCAAA
 
43
CATGTGCGGATAATGCCTTCGCTGACGGCAAGAAATTATATACGCCTCGAAACTGTAGAA
 
44
CGTCTTTTGTGCCGCTTGGTAACAAATAAACCTAGCCGGGGCCAGAATTTCACCCGTACA
 
45
TACTTACTGTTACATACTGCATGCACGCTACGCATTCTCACCGAACATCGAATCTGCCTG
 
46
CAGAAGCGAAGAAAAGCAAGTCTTCGAAGAGCAAGCTTACATCCATCGTGTTGAACACAT
 
47
ATGCCCAGCAAAGGGATCGGATGACGCCCAACTAACATTGGAATTTGTGACGCAAGGCTG
 
48
AAAGGCACTTCTCTATAGCCCACGGTGAAGCCTTACGCTATTGACAAGACAAAACATGCC
 
49
GATCCAAGCCAGGCGAAACGGGCCTAGCACTACGCAGCCAAACACTGGCGTTCCGCCCGT
 
50
CCCATCCAGTTTCATTTCTTATTTCGTTCTGCCTTGGGCCTAGCAGCGTGCTTGCCGGAT
 
51
GAGTTTTTTCCATTTTCCTACCGGCTCATCTCGCTAAGCTGAAAGGTCAGTTTTATAGCC
 
52
GTGTGCGCGGCATCGAGAGACAGGTTCAGCTAATGATATTTGCCTAATTCTCGAGCTGAG
 
53
GCCAATGAAGGCAGCTTCCAGGGCTCGTTTCTGCTCGGGAAAAAGCATACCACACATTTG
 
54
CACGGCTTTTATGTGCCATAGTGCCACCACTAGCCCCCAG
 
55
>WashU_Skud_Contig1362.1 YDR047W 5' untranslated region, Contig c1362 1 - 761, 2000 bp (revcom)
 
56
AGTGTTGATGGTATCTTTTGATTTTTTCTAGATTGGTAGCAAGCTCAATTGGCACAGCTC
 
57
TAAAAAAAGCCTTGTGAATTGGATAGTACCTTCTTTCGTTTGGAACATTACTGCTTCGAG
 
58
CAATAAACATACGAAAGGCAGAACACCTCGTTGACAAAACTGAAACTATTTCTTCAATTT
 
59
TTTGGCCTTTTTTCCTGCTGCCAAAAAACCCCGAATCATGTAGAAGCGAGAAGTAAAACA
 
60
GAGGAAGTGTATGGTAGCGCCAAGGAAAACGGGCAATACTTAGAAAGAATGACAGAGCTC
 
61
AGCCAAGTGTAAGCTAAGTGTTGACAAGGGAAGGTACATTGGGCCCCGAAAAAATTTGCT
 
62
AATGCTCGAAGAGCTCTCAATCAATCACCCACATATATGTACTACAGTATATTTATACTT
 
63
TCCACGCAGTCTCACGCAGTGCCACCTTCATCACCATGCGTGTAACTAATCGAGCAAGCT
 
64
GTTTTACGAAGGGCAGCTTTCCTATAAGCGTTTTGAACATGCATGGCTGCACTGCAATGA
 
65
GATCAGGCGACTCCAATTCCATAGCCTAGCACGGGATTAAGTAACGAGAAACTGAAAGAG
 
66
ATAATTTTACAAACCCGGACGAAGCAGAGCACTTGCTGGAACAAATCAAACATGCCGTCC
 
67
CCTACCAGCTCTCGAAGCGGGCCTAGCATTACTCGATCGAACGTTGCCGTTTAGTCTTAT
 
68
TTTCCTTTCCGTGCTGCGCTGCTTTTTTCTTGCATTGGGCT
 
69
>SGD_Scer_YOR176W HEM15 "Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; Yfh1p mediates the use of iron by Hem15p"
 
70
TCTTTAAACGTTCTTTTTTTTACTGCTAAATTTGTCCAAATAGCAGGTATGTGTTAAATA
 
71
TTTCTGTACTTCTTGTAAACCGACTCAAGTGGAACACGAGAATTTACGCTTGTTTGGTGT
 
72
CAAGCCAAGAGTGACCTTGACCGACCAAAAGTATTCCTTCGCGTCCTCCTTCTTCAATCC
 
73
CATATCCCCTACGAAAAAAAGCAGCATGAGAAAACGAAGGGCAGCAACTCCTTCGTCATA
 
74
TAAGGCTTACGGTGACCATTGAAGATTGGGCATGTCTAACGGCTATTGCCAGCGGAGATG
 
75
TTTCAAGGCATCCTACACATGCTACATATTTGTAATTATTTTACTGAGTTTGTGTATATA
 
76
AAAAACTTTTTTAAAAAAAAAAAATGGCCAGCATCCTCTTTCATGTAAAGCTGTTGAACC
 
77
TTCCTGAAATTTACTTCTAAAATTGTTCAGTAAAACTGCTTGTTAAAAGTGCGAAGAGTT
 
78
CTTTTTTAGCTTTTTTTGTCCTGCTGTTGAGCTGTTTTGCTTTACTGTTCAACAAAACAT
 
79
TGAAGATCTTTCACATTGCGCGTCGAAACCACAAACCGTCGAAAACAATGGTCATCTAAA
 
80
TAAAGGGTTCTTATTAAACAGATTTAAAGCCAAGGACAAAATACAGGCACAGGTCAAGCA
 
81
AGAAGACAAACCGCATACGCCAAGACAAACCGTGGTGATTTAATTCTGCTGCTGATCGCT
 
82
TCCAACA
 
83
>MIT_Spar_c278_20970 YOR176W 5' untranslated region, Contig c278 32746 - 34745, 2000 bp (revcom)
 
84
TCTTCAAACGTTCTTTTCCTACTACTAAGCTTTTCAATAAATAGCGGGTATATGCTAAAT
 
85
ACTTCTTTGCTTCTTGTACGACCTACTTAATTGAAATACGGATATTTTTGCTTGCTTGGT
 
86
GCCAAACCAAGAGTGACCTTGACCGACTAAAAGTATTCCTTCGCGTCCTCCTTCTTCAAT
 
87
CCCATATCCCCTACTGAAAAAAGCAGCGTGCGAAAATGAAGGGCAGCAACTCCTTCGTCA
 
88
TATAAGGCTTAGGTAATCTTTCAAGGTCAGGTATATCCAGCTGTCGTTACGAGTAGAGAT
 
89
ATTTCAAGCTGTCCTGCACATGCTACATATTTGTGATTATTTTTATTGAGTTGCGTATAT
 
90
AAAAAAACAATCTAAAAAAAAAAAAAATGGCCAGCATCTTCTTCCATGTAAAGCTGTTGA
 
91
ACCTTGCTAAAATCTATTACTATAATTGTTCAGTAAAGTTGCTTGTTAAAAATGCGAAGA
 
92
GTCTTTTTTAGCTTTTTTTGCCCTGCTGTTGAGCTGTTTTGCTTCACTGTTCAACAAAAC
 
93
AGTGAAGATCTTTCGAATTGCGCGTCGAAACCACAAACCGTCGAAAATAATGGTCATCTA
 
94
AATAAAGGGTTCTTATTTGAACAGATTTAAAGCTCAAAGACACGATACAGGCACAGGTCC
 
95
AGAAAGAATACAAAACGCAAACGCCAAGACAAATTGTGGTAATTTCATTCTGCTGCTGAT
 
96
CACTGCC
 
97
>MIT_Smik_c935_20455 YOR176W 5' untranslated region, Contig c935 1803 - 3802(revcom), 2000 bp (revcom)
 
98
TCTTGAATTGCAATTTTCTACTACTGAAGTTACCAACAATTAGCAAATATGTGATGAGTC
 
99
CTTTTTACGTTCTTGTATAACCTAAGTTAAATACAAAGGTTTATGCTCCTTTAATGATCA
 
100
GACCAACAGTGATCTTGGCCGACCAAAAGACTCCTTCGCGTCCTCCTTCTTCAAGTCTCA
 
101
TATCCCCTACCAGAAAAAGTAGCAGGCGAAAATAAAGAGCAACTGCTCCCCCCCATATAG
 
102
AGCTTACCATAATTTCTCAAGGAAAGGTATCTCCAGTTGTCGTAAAGAATAAAGAAGTTT
 
103
CAACGTGTCCTGCATGTTCTACAAATTTGCAATTGACTTTACTAAGTTGCATATATAAAA
 
104
CTTGTATTAGATAAGTTAGCCAGCATTTTCATTCAAGCTAAGATGTTGAATATGCCAAAG
 
105
CACATTGCTGAAATTAATCAGTAAAGCTGCTTGCTGAAAGTGGAAATATTTTCAGCTTTT
 
106
TTTGCTCTGCTGTTGAGCTGTTTTACTTCATTGTTCAACAAAACAATAGAGTTCTCTCCA
 
107
ATTGCGCGTCAAAACCACAAACCGTCGAAAATAATGATCATCTAAATAAAAGAGTTCACG
 
108
TTTTCACATATTTAAAGTTGAAATACTCCATACAGGCACAGGTCTAACAAGAAGACAACG
 
109
CATTCGATAAAACTAATCGTGGTAATTTTTATATCGCTGCTAGCCACTACCAACAATGTA
 
110
CAATTTT
 
111
>WashU_Skud_Contig2050.4 YOR176W 5' untranslated region, Contig c2050 12271 - 14270(revcom), 2000 bp (revcom)
 
112
TCTTAGTTTATAGCTTTTCTACTACTCTGGTCATAAACGAACAGAAGATAAGCAAGAAAT
 
113
CTTTTTTTCCTTCTTTTACGGTCTATTCAAGTGAAGCACGGGGATTCCCGCTTGTTTAAT
 
114
AATCAGACCAACAATGATATTGACCGACCAAAAGAAGTATTCCTTCGCGTGCTTCTCCTT
 
115
TCTGTGTCAAATCCCCTACTGAAAAAGCAGCATTGGGAAAGGAACAGCAGCTTCTCCTTC
 
116
GTCGCAGAGAGCTCGCGGTAGCATTTCATTGTCAGGTATTTATGATATTTGCTAAGAATA
 
117
ATTAAAATGTCTTCAGGTCTTGCACATACTCCTACATATTTGTAAGTATTTTACTGATTT
 
118
GAGTATATAAAAGCCGTACTAAAACTAACCAGCACCTGTAGCAAGGTGCAAAATGTTGAA
 
119
CCTTTCCGAAATTTATTGCCAGAAACCAAGAGCTAAAAGTGCTTGGTAAAAGTGAAAAGA
 
120
CTCTTTTTCAGCTGTTTTTTGTTCTGCTGTTGAGCTGTTTTGTTCCATCTGTTCAACAAA
 
121
ACAGCTTCACTGGATCTTTCAAAGTGCGCGTCGAAACCACAAACCGTCGAAAATATTGAT
 
122
CATCTAAATAAAGGGTTCTTATTTGCACAGTTTCGCATTGAAATATTCCATTCAGGCACA
 
123
GATCAACAAGAAGACAAAAAGGTATTCGAGAAGACTAATTGTGGTATTTTTACTTTGCTG
 
124
CTGACCA
 
125
>WashU_Sbay_Contig480.2 YOR176W 5' untranslated region, Contig c480 3444 - 5443(revcom), 2000 bp (revcom)
 
126
TTTCAGGGAAGCACCATGTGCACGAATTGTTCTAGAAAGCATTTTTGGTTCGTAAATTCT
 
127
CTACAACTGAACTTATTAACAAATAGCAAACAGAGAAGAAAATTTTTTTTTTCCTTCTTG
 
128
TATGGTCAGTTAGTTGAAAACACGGAGATTTTCACTTGTTTAGTAAGCAGAGCCATAATG
 
129
CTCTTGACCGACCAAAAGAAGTATTCCTACGCGAGCTCCCTCTTCAAGTGCCAAATCCCC
 
130
TACTGAAAAAAGCAACATGAGAAGCAAAGAGATGCCTCTCGCCATGCAGGGCTTGCGGTC
 
131
ATGTTTTCTACGTTCAATTGATTTTGTTACAGCTGAAAGATGTTTATAAAACTGTCTTGC
 
132
ATATGCTCTATTTACTTGTAAACAATTTTATTAAGTTGCGTATATATGATCGTACTAAAA
 
133
ATTGGCTGGCGCGTTCTCCAGGCAGAGTTGGTTGAACCTTGCTCGAATTGATAGCTCAAA
 
134
GTGGAGAGACTCTTTTTTAGCTGTTTTTTGTTCTGCTGTTGAGCTGTTTTGCTCCACCTG
 
135
TTCAACAAAATGGCAGAGATCTTTCGAAGTGCGCGTCGAAACCACAAACCATCAAAAATA
 
136
TCGACCATCTAAATAAAGGGTTCTTGTTTGAATAAATATCAGGCGAAGCTCTTCATACAG
 
137
GCACAGGTCAGATAAGAAGACAATTCGAATTCGAGAAGGATATTCGTGGTATCTTTAATC
 
138
TGCTGCT