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- Committer: Bazaar Package Importer
- Date: 2009-03-10 07:19:11 UTC
- mfrom: (1.2.3 upstream)
- Revision ID: james.westby@ubuntu.com-20090310071911-fukqzw54pyb1f0bd
* Removed patch system (not used):
- removed instuctions in debian/rules;
- removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
- uncommented test command in debian/rules;
- uncommented previously missing build-dependencies in debian/control.
- Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
instead of rmdir in debian/rules (LP: #324001).
- removed instuctions in debian/rules;
- removed quilt from Build-Depends in debian/control.
* Re-enabled tests:
- uncommented test command in debian/rules;
- uncommented previously missing build-dependencies in debian/control.
- Re-enabled tests and uncommented build-dependencies accordingly.
* Removed libmodule-build-perl and libtest-harness-perl from
Build-Depends-Indep (provided by perl-modules).
* Better cleaning of empty directories using find -type d -empty -delete
instead of rmdir in debian/rules (LP: #324001).
- files added:
- Bio/AlignIO/Handler
- Bio/Assembly/Tools
- Bio/DB/HIV
- Bio/DB/TFBS
- Bio/MolEvol
- Bio/PhyloNetwork
- Bio/Root/Test
- Bio/SearchIO/XML
- Bio/SeqEvolution
- Bio/SeqIO/Handler
- Bio/Tools/EUtilities
- Bio/Tools/EUtilities/Info
- Bio/Tools/EUtilities/Link
- Bio/Tools/EUtilities/Query
- Bio/Tools/EUtilities/Summary
- Bio/Tools/Signalp
- examples/quality
- t/Align
- t/AlignIO
- t/Annotation
- t/Assembly
- t/Biblio
- t/ClusterIO
- t/Coordinate
- t/LiveSeq
- t/LocalDB
- t/Map
- t/Matrix
- t/Matrix/IO
- t/Ontology
- t/Ontology/IO
- t/Phenotype
- t/PopGen
- t/RemoteDB
- t/RemoteDB/HIV
- t/Restriction
- t/Root
- t/SearchIO
- t/SearchIO/Writer
- t/Seq
- t/SeqFeature
- t/SeqIO
- t/SeqTools
- t/Structure
- t/Tools
- t/Tools/Alignment
- t/Tools/Analysis
- t/Tools/Analysis/DNA
- t/Tools/Analysis/Protein
- t/Tools/EMBOSS
- t/Tools/EUtilities
- t/Tools/Phylo
- t/Tools/Phylo/Phylip
- t/Tools/Run
- t/Tools/Signalp
- t/Tools/Spidey
- t/Tree
- t/Tree/PhyloNetwork
- t/Tree/TreeIO
- t/Variation
- t/data/dbqual
- t/data/eutils
- t/data/map_hem
- t/data/transfac_pro
- t/lib/Array
- t/lib/Sub
- t/lib/Test/Harness
- t/lib/Tree
- files removed:
- Bio/DB/Biblio/pdf.pm
- Bio/DB/EUtilities
- Bio/Graph
- Bio/Graph/IO
- Bio/Graph/SimpleGraph
- Bio/Graphics
- Bio/Graphics/FeatureFile
- Bio/Graphics/Glyph
- Bio/Tools/BPlite
- debian/patches
- examples/biographics
- scripts/biographics
- scripts/graphics
- t/data/biographics
- t/data/biographics/t1
- t/data/biographics/t2
- t/data/biographics/t3
- files modified:
- AUTHORS
- Build.PL *
- doc/Deobfuscator/Build.PL *
- doc/Deobfuscator/Makefile.PL *
- examples/generate_random_seq.pl *
- examples/searchio/waba2gff3.pl *
- maintenance/symlink_script.pl *
added
removed
scripts/utilities/pairwise_kaks.PLS
