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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2008-03-18 14:44:57 UTC
  • mfrom: (4 hardy)
  • mto: This revision was merged to the branch mainline in revision 6.
  • Revision ID: james.westby@ubuntu.com-20080318144457-1jjoztrvqwf0gruk
http://bugs.debian.org/448890
* debian/control:
  - Removed MIA Matt Hope (dopey) from the Uploaders field.
    Thank you for your work, Matt. I hope you are doing well.
  - Downgraded some recommended package to the 'Suggests' priority,
    according to the following discussion on Upstream's mail list.
    http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
    (Closes: #448890)
* debian/copyright converted to machine-readable format.

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Bio/DB/GFF/Aggregator/alignment.pm
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 -----------------------------
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 Aggregator method: alignment
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 Main method:       (none)
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 Sub methods:       similarity, HSP
 
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 Sub methods:       nucleotide_match,EST_match,cDNA_match,expressed_sequence_match,
 
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                    translated_nucleotide_match,protein_match,HSP
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 -----------------------------
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=head1 DESCRIPTION
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use strict;
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use Bio::DB::GFF::Aggregator;
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use vars qw(@ISA);
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@ISA = qw(Bio::DB::GFF::Aggregator);
 
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use base qw(Bio::DB::GFF::Aggregator);
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=head2 aggregate
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 Title   : part_names
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 Usage   : $aggregator->part_names
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 Function: return the methods for the sub-parts
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 Returns : the list ("similarity","HSP")
 
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 Returns : the full list of aggregated methods
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 Args    : none
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 Status  : Public
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sub part_names {
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  my $self = shift;
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  return qw(similarity HSP);
 
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 return qw(nucleotide_match EST_match cDNA_match
 
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           expressed_sequence_match
 
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           translated_nucleotide_match
 
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           protein_match HSP);
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}
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1;