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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2008-03-18 14:44:57 UTC
  • mfrom: (4 hardy)
  • mto: This revision was merged to the branch mainline in revision 6.
  • Revision ID: james.westby@ubuntu.com-20080318144457-1jjoztrvqwf0gruk
http://bugs.debian.org/448890
* debian/control:
  - Removed MIA Matt Hope (dopey) from the Uploaders field.
    Thank you for your work, Matt. I hope you are doing well.
  - Downgraded some recommended package to the 'Suggests' priority,
    according to the following discussion on Upstream's mail list.
    http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
    (Closes: #448890)
* debian/copyright converted to machine-readable format.

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t/data/Treebase-chlamy-dna.nex
 
1
#NEXUS
 
2
[File created by TreeBASE:  12/13/00  11:58:39]
 
3
[Matrix accession#: M809]
 
4
BEGIN DATA;
 
5
DIMENSIONS  NTAX=14 NCHAR=629;
 
6
 
 
7
[!This data set was downloaded from TreeBASE, a prototype relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, and UC Davis. Please do not remove this acknowledgment from the Nexus file. 
 
8
TreeBASE � 1994-2000.
 
9
 
 
10
Study reference: 
 
11
Coleman, A. W., L. Jaenicke, and R. C. Starr. 2001. Genetics and sexual behavior of the pheromone producer, Chlamydomonas allensworthii (Chlorophyceae). J. Phycology 37, in press.
 
12
 
 
13
Study accession number = S549
 
14
Matrix accession number = M809
 
15
]
 
16
FORMAT DATATYPE = DNA MISSING = - GAP = # INTERLEAVE  ;
 
17
MATRIX
 
18
 
 
19
'Chlamydomonas_reinhardtii_Crein'         AATCTATCACAATCCACACCGCGAACTAACACTGTTGGCCTCCGTCTGTG-TAAAAGCA-----AACGGGCCAGGTCTGGGCGCAATGTAAAAGTTACGC
 
20
'Chlamydomonas_allensworthii_Cat'         AATCTATCAATACCAACACCGAGAACCGATTCGTCTGACC-CCGTC-GTGGCGCAAGCG---ACGACGG-CGCTTGCCGATCCG----TAAATT-CGGAT
 
21
'Chlamydomonas_allensworthii_21A'         AATCTATCAATACCAACACCGAGAACCAATTCGTCTGACC-CCGTC-GTGGCGCAAGCG---ACGACGG-CGCTTGCCGATCCG----TTTATT-CTGAT
 
22
'Chlamydomonas_allensworthii_Neb'         AATCTATCAATACCAACACCGAGAACCGATTCGTCTGACC-CCGTC-GTGGCGCAAGCG---ACGACGG-CGCTTGCCGTTCCG----TTTATT-CGGAT
 
23
'Chlamydomonas_allensworthii_Hon2'        AATCTATCAATACCAACACCGAGAACCGATTCGTCTGACC-CCGTC-GTGGCGCAAGCG---ACGACGG-CGCTTGCCGATCCG----TTTATT-CGGAT
 
24
'Chlamydomonas_allensworthii_Hon9'        AATCTATCAATACCAACACCGAGAACCAATTCGTCTGACC-CTGTT-GATGCGCAAGCA---GCAACGG-CGCTTGCCGATGCG----TTAACT-CGGGT
 
25
'Chlamydomonas_allensworthii_Chile'       AATCTATCAATAACAACACCGAGAACCATTTCGTCTGACC-CT-TTATAAGCCTTTGGGTTTATAACGG-CGCCTGTTGTTTGG----TTAATT-CCAAG
 
26
'Chlamydomonas_allensworthii_Flam'        AATCTATCAATAACAACACCGAGAACCATTTCGTCTGACC-CT-TTATAAGCCTTTGGGTTTATAACGG-CGCCTGTTGTTTGG----TTAATT-CCAAG
 
27
'Chlamydomonas_allensworthii_88.10'       AATCTATCAATAACAACACCGAGAACCATTTCGTCTGACC-CTTTTATAAGCCTTTGGGTTTATAACGG-CGCCTGTTGTTTGG----TTAATT-CCAAG
 
28
'Chlamydomonas_allensworthii_266'         AATCTATCAATAACAACACCGAGAACCATTTCGTCTGACC-CTTTTATAAGCCTTTGGGTTTATAACGG-CGCCTGTTGTTTGG----TTAATT-CCAAG
 
29
'Chlamydomonas_allensworthii_Krueger'     AATCTATCAATAACAACACCGAGAACCATTTCGTCTGACC-CTTTTATAAAC-TTCGGGTTTATAACGG-CGCCTGTTGTTTGG----TTAATT-CTAAG
 
30
'Chlamydomonas_allensworthii_LCA'         AATCTATCAATACCAACACCGAGAACCATTTCGTCTGACC-CTCCTAT--GCTTTCGGG--TATAGAAG-CGCTCGGAGCCTAG----TTAATT-CTAAG
 
31
'Chlamydomonas_allensworthii_LCH'         AATCTATCAATACCAACACCGAGAACCATTTCGTCTGACC-CTTCTAT--GCTTTCGGG--TATAGAGG-CGCTCGTTGCCTAG----TTAATT-CTAAG
 
32
'Chlamydomonas_allensworthii_LCN'         AATCTATCAATACCAACACCGAGAACCATTTCGTCTGACC-CTTCTAT--GCTTTCGGG--TATAGAGG-CGCTTGGAGCCTAG----TTAATT-CTAAG
 
33
 
 
34
 
 
35
'Chlamydomonas_reinhardtii_Crein'         CTGGCCTGGGT------TGCCGCAA------GGCATCGGTCTCTTATACTAACCAACCAACACCAAACCAAAACTAAATTAAAACCGAGTATCTAGCTTA
 
36
'Chlamydomonas_allensworthii_Cat'         CGGCGATCGGGCTCCGGGGCCTCAAAACCCTAGGGTCGGTCTCT----GTCCAACAACAACACCAAACCAATACCTCTAACTAAAC-TGCATTCGGCTC-
 
37
'Chlamydomonas_allensworthii_21A'         CGGCGATCGGGCTCCGGGGCCTCAAAACCCTAGGGTCGGTCTCT----GTCCAACAACAACACCAAACCAATACCTCTAACTAAAC-TGCATTCGGCTC-
 
38
'Chlamydomonas_allensworthii_Neb'         CGGCGATCGGGCTCCGGGGCCTCAAAACCCTAGGGTCGGTCTAT----GTCCAACAACAACACCAAACCAATACCTCTAACTAAAC-TGCATTCGGCTC-
 
39
'Chlamydomonas_allensworthii_Hon2'        CGGCGATCGGGCTCCGGGGCCTCAAAACCCTAGGGTCGGTCTAT----GTCCAACAACAACACCAAACCAATACCTCTAACTAAAC-TGCATTCGGCTC-
 
40
'Chlamydomonas_allensworthii_Hon9'        CGGTGATCGGGCTCTAGGGCTTAACAACCCTAGGGTCGGTCCCT----GTCCAACAACAACACCAAACCAATACCTCTAACTAAAC-TGCATTCGGCTC-
 
41
'Chlamydomonas_allensworthii_Chile'       CACCAGGTGGGCTC---GGCTT-------GCCGAGTTGGTCTCT----GTCCAACAACAACACCAAACCAATAATTCTAATTATCC-TGCATTCGGCAT-
 
42
'Chlamydomonas_allensworthii_Flam'        CACCAGGTGGGCTC---GGCTT-------GCCGAGTTGGTCTCT----GTCCAACAACAACACCAAACCAATAATTCTAATTATCC-TGCATTCGGCAT-
 
43
'Chlamydomonas_allensworthii_88.10'       CACCAGGTGGGCTC---GGCTT-------GCCGAGTTGGTCTCT----GTCCAACAACAACACCAAACCAATAATTCTAATTATCC-TGCATTCGGCAT-
 
44
'Chlamydomonas_allensworthii_266'         CACCAGGTGGGCTC---GGCTT-------GCCGAGTTGGTCTCT----GTCCAACAACAACACCAAACCAATAATTCTAATTATCC-TGCATTCGGCAT-
 
45
'Chlamydomonas_allensworthii_Krueger'     CACCAGGTGGGCTC---GGCTT-------GCCGAGTTGGTCTCT----GTCCAACAACAACACCAAACCAATAATTCTAATTATCC-TGCATTCGGCAT-
 
46
'Chlamydomonas_allensworthii_LCA'         CTCCGGGTGGGCTC---GGCTTC-----GGCTGGGTTGGTTCCT----GTCCAACAACAACACCAAACAAATAATTCTAAATAATC-TGCATTCGGCA--
 
47
'Chlamydomonas_allensworthii_LCH'         CTCCGGGTGGGCTC---AGCTTC-----GGCTGGGTTGGTTCTT----GTCCAACAACAACACCAAACAAATAATTCTAAATAATC-TGCATTCGGCA--
 
48
'Chlamydomonas_allensworthii_LCN'         CTCCGGGTGGGCTC---GGCTTC-----GGCTGGGTTGGTCCTT----GTCCAACAACAACACCAAACAAATAATTCTAAATAATC-TGCATTCGGCA--
 
49
 
 
50
 
 
51
'Chlamydomonas_reinhardtii_Crein'         GAGCTAGTGCTCACTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGGATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
52
'Chlamydomonas_allensworthii_Cat'         -AGCCGGTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
53
'Chlamydomonas_allensworthii_21A'         -AGCCGGTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
54
'Chlamydomonas_allensworthii_Neb'         -AGCCGGTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
55
'Chlamydomonas_allensworthii_Hon2'        -AGCCGGTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
56
'Chlamydomonas_allensworthii_Hon9'        -AGCCGGTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
57
'Chlamydomonas_allensworthii_Chile'       -AGCCGATGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
58
'Chlamydomonas_allensworthii_Flam'        -AGCCGATGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
59
'Chlamydomonas_allensworthii_88.10'       -AGCCGATGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
60
'Chlamydomonas_allensworthii_266'         -AGCCGATGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
61
'Chlamydomonas_allensworthii_Krueger'     -AGCCGATGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
62
'Chlamydomonas_allensworthii_LCA'         -ATCGGCTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
63
'Chlamydomonas_allensworthii_LCH'         -ATCGGCTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
64
'Chlamydomonas_allensworthii_LCN'         -ATCGGCTGC-ATCTAACCAAGA-CAACTCTCAACAACGGATATCTTGGCTCTCGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGC
 
65
 
 
66
 
 
67
'Chlamydomonas_reinhardtii_Crein'         AGAAATACGTGAATCATCGAATCTTTGAACGCATATTGCGCTCGAGGCTTCGGCCAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCCCTA-CT
 
68
'Chlamydomonas_allensworthii_Cat'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
69
'Chlamydomonas_allensworthii_21A'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
70
'Chlamydomonas_allensworthii_Neb'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
71
'Chlamydomonas_allensworthii_Hon2'        AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
72
'Chlamydomonas_allensworthii_Hon9'        AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
73
'Chlamydomonas_allensworthii_Chile'       AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
74
'Chlamydomonas_allensworthii_Flam'        AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
75
'Chlamydomonas_allensworthii_88.10'       AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
76
'Chlamydomonas_allensworthii_266'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
77
'Chlamydomonas_allensworthii_Krueger'     AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
78
'Chlamydomonas_allensworthii_LCA'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATA
 
79
'Chlamydomonas_allensworthii_LCH'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATT
 
80
'Chlamydomonas_allensworthii_LCN'         AGAAAACCGTGAACCATCGAATCTTTGAACGCATATTGCGCTCGACCCTTCGGGGAAGAGCATGTCTGCCTCAGCGTCGGGTT-AATACTCGCTCCAATA
 
81
 
 
82
 
 
83
'Chlamydomonas_reinhardtii_Crein'         CCAACATACACTTGTGTGTTTGGAGCAAGAGCGGACCTGGCTGTCTCGGTGTTTGATTTTCGGATCAGACGCCGGGTCAGCTGAAGTACAGAGGTTGATG
 
84
'Chlamydomonas_allensworthii_Cat'         CCACA--------------------TTGGAACGGATCTGGCAGTCTCAGTCTGC------------AAAGACTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
85
'Chlamydomonas_allensworthii_21A'         CCACA--------------------TTGGAACGGATCTGGCAGTCTCAGTTTGC------------AAAGACTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
86
'Chlamydomonas_allensworthii_Neb'         CCACA--------------------TTGGAACGGATCTGGCAGTCTCAGTTTGC------------AAAGACTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
87
'Chlamydomonas_allensworthii_Hon2'        CCACA--------------------TTGGAACGGATCTGGCAGTCTCAGTTTGC------------AAAAACTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
88
'Chlamydomonas_allensworthii_Hon9'        CCACA--------------------TTGGAACGGATCTGGCAGTCTCGGTTTGC------------AAAAACCGGGTCTGCTGAAGTGCAGAGGTTGATG
 
89
'Chlamydomonas_allensworthii_Chile'       CCCCAA-------------------TTGGAACGGATCTGGCAGTCTCAGCTTTTTC--------AATAGAGCTGGGCCTGCTGAAGTGCAGAGGTTGATG
 
90
'Chlamydomonas_allensworthii_Flam'        CCCCAA-------------------TTGGAACGGATCTGGCAGTCTCAGCTTTTTC--------AATAGAGCTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
91
'Chlamydomonas_allensworthii_88.10'       CCCCAA-------------------TTGGATCGGATCTGGCAGTCTCAGCTTTTTC--------AATAGAGCTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
92
'Chlamydomonas_allensworthii_266'         CCCCAA-------------------TTGGAACGGATCTGGCAGTCTCAGCTTTTTC--------AATAGAGCTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
93
'Chlamydomonas_allensworthii_Krueger'     CCCCAA-------------------TTGGAACGGATCTGGCAGTCTCAGCTTTTTC--------AATAGAGCTGGGTCTGCTGAAGTGCAGAGGTTGATG
 
94
'Chlamydomonas_allensworthii_LCA'         CCACA--------------------TTGGAACGGACCTGGCAGTCTCAGTTCTTTG--------ATTAGAGCTGGGTCTGCTGAAGTGCAGAGATTGATG
 
95
'Chlamydomonas_allensworthii_LCH'         CCACA--------------------TTGGAACGGACCTGGCAGTCTCAGTTCTTTT--------AATAGAGCTGGGTCTGCTGAAGTGCAGAGATTGATG
 
96
'Chlamydomonas_allensworthii_LCN'         CCACA--------------------TTGGAACGGACCTGGCAGTCTCAGTTCTTTG--------ATTAGAGCTGGGTCTGCTGAAGTGCAGAGATTGATG
 
97
 
 
98
 
 
99
'Chlamydomonas_reinhardtii_Crein'         CATGGACCCGCTTATGGGCCTCTACTGGGTAGGCAACTCGTTGCTAATGCTTTAGTAGATGGCTTGGAGCTGTGCTTGTCGACCCAAACCAGGAACTTTG
 
100
'Chlamydomonas_allensworthii_Cat'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACT-
 
101
'Chlamydomonas_allensworthii_21A'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACC-
 
102
'Chlamydomonas_allensworthii_Neb'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACT-
 
103
'Chlamydomonas_allensworthii_Hon2'        TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACT-
 
104
'Chlamydomonas_allensworthii_Hon9'        TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACA-
 
105
'Chlamydomonas_allensworthii_Chile'       TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACC-
 
106
'Chlamydomonas_allensworthii_Flam'        TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACC-
 
107
'Chlamydomonas_allensworthii_88.10'       TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACC-
 
108
'Chlamydomonas_allensworthii_266'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACC-
 
109
'Chlamydomonas_allensworthii_Krueger'     TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGACCCTCAACAGGAAAACC-
 
110
'Chlamydomonas_allensworthii_LCA'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGATCCTCAACAGGAAAAC--
 
111
'Chlamydomonas_allensworthii_LCH'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGATCCTCAACAGGAAAAC--
 
112
'Chlamydomonas_allensworthii_LCN'         TA-GGACCCGC-TATGGGCCGCAACTGGGTAGGCA-CTCGT-GCTAATTCTT-AGTTGTTGGCTTGGGACT-TGCT-GTCGATCCTCAACAGGAAAAC--
 
113
 
 
114
 
 
115
'Chlamydomonas_reinhardtii_Crein'         GCCCTGTGCCGAAGCAAACCCCTATTTTC
 
116
'Chlamydomonas_allensworthii_Cat'         ---------------ATTAACCTATTTTC
 
117
'Chlamydomonas_allensworthii_21A'         ---------------ATTAACCTATTTTC
 
118
'Chlamydomonas_allensworthii_Neb'         ---------------ATTAACCTATTTTC
 
119
'Chlamydomonas_allensworthii_Hon2'        ---------------ATTAACCTATTTTC
 
120
'Chlamydomonas_allensworthii_Hon9'        ---------------ATTAACCTATTTTC
 
121
'Chlamydomonas_allensworthii_Chile'       ---------------ATTAACCTATTTTC
 
122
'Chlamydomonas_allensworthii_Flam'        ---------------ATTAACCTATTTTC
 
123
'Chlamydomonas_allensworthii_88.10'       ---------------ATTAACCTATTTTC
 
124
'Chlamydomonas_allensworthii_266'         ---------------ATTAACCTATTTTC
 
125
'Chlamydomonas_allensworthii_Krueger'     ---------------ATTAACCTATTTTC
 
126
'Chlamydomonas_allensworthii_LCA'         ---------------ATTAACCTATTTTC
 
127
'Chlamydomonas_allensworthii_LCH'         ---------------ATTAACCTATTTTC
 
128
'Chlamydomonas_allensworthii_LCN'         ---------------ATTAACCTATTTTC
 
129
;
 
130
END;
 
131
 
 
132
BEGIN CODONS;
 
133
CODONPOSSET * CodonPositions = 
 
134
 N: 1 - 629 ; 
 
135
 CODESET * UNTITLED = Universal: all ; 
 
136
 END;
 
137
BEGIN ASSUMPTIONS;
 
138
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
139
 END;
 
140
BEGIN TREEBASE;
 
141
END;
 
142
 
 
143
BEGIN TREES;
 
144
 
 
145
[! 1 trees. TreeBASE accession#: Tree1641 ]
 
146
        TRANSLATE
 
147
                1       'Chlamydomonas_allensworthii_Krueger',
 
148
                2       'Chlamydomonas_allensworthii_88.10',
 
149
                3       'Chlamydomonas_allensworthii_Chile',
 
150
                4       'Chlamydomonas_allensworthii_Flam',
 
151
                5       'Chlamydomonas_allensworthii_Hon9',
 
152
                6       'Chlamydomonas_allensworthii_Hon2',
 
153
                7       'Chlamydomonas_allensworthii_LCN',
 
154
                8       'Chlamydomonas_allensworthii_LCH',
 
155
                9       'Chlamydomonas_allensworthii_LCA',
 
156
                10      'Chlamydomonas_allensworthii_266',
 
157
                11      'Chlamydomonas_allensworthii_Neb',
 
158
                12      'Chlamydomonas_allensworthii_21A',
 
159
                13      'Chlamydomonas_allensworthii_Cat',
 
160
                14      'Chlamydomonas_reinhardtii_Crein',
 
161
                15      'Chlamydomonas_allensworthii',
 
162
                16      'Chlamydomonas',
 
163
        ;
 
164
        TREE 'Fig._2' =  [&R] (((((7,9),8),(1,(10,2,4,3))),(5,((6,11),12,13))),14);
 
165
 
 
166
 
 
167
END;