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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2008-03-18 14:44:57 UTC
  • mfrom: (4 hardy)
  • mto: This revision was merged to the branch mainline in revision 6.
  • Revision ID: james.westby@ubuntu.com-20080318144457-1jjoztrvqwf0gruk
http://bugs.debian.org/448890
* debian/control:
  - Removed MIA Matt Hope (dopey) from the Uploaders field.
    Thank you for your work, Matt. I hope you are doing well.
  - Downgraded some recommended package to the 'Suggests' priority,
    according to the following discussion on Upstream's mail list.
    http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
    (Closes: #448890)
* debian/copyright converted to machine-readable format.

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t/data/psi_xml.dat
 
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<entrySet xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:psi="net:sf:psidev:mi" xmlns="net:sf:psidev:mi" xmlns:xin="http://dip.doe-mbi.ucla.edu/xml/XIN" xsi:schemaLocation="net:sf:psidev:mi MIF.xsd" level="1" version="1">
 
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 <entry>
 
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   <interactorList>
 
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     <proteinInteractor id="G_1">
 
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       <names>
 
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         <shortLabel/>
 
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         <fullName>adenine specific DNA methyltransferase (dpnA) HP0050</fullName>
 
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       </names>
 
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       <xref>
 
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         <primaryRef db="DIP" id="3048N"/>
 
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<secondaryRef db="PIR" id="B64526"/>
 
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<secondaryRef db="GI" id="2313123"/>
 
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<secondaryRef db="RefSeq" id="NP_206851"/>
 
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</xref>
 
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<organism ncbiTaxId="85962">
 
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<names>
 
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<shortLabel/>
 
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<fullName>Helicobacter pylori 26695</fullName>
 
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</names>
 
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</organism>
 
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</proteinInteractor>
 
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<proteinInteractor id="G_2">
 
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<names>
 
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<shortLabel/>
 
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<fullName>hypothetical HP0001</fullName>
 
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</names>
 
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<xref>
 
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<primaryRef db="DIP" id="3047N"/>
 
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<secondaryRef db="SWP" id="O24853"/>
 
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<secondaryRef db="PIR" id="A64520"/>
 
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<secondaryRef db="GI" id="2313078"/>
 
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<secondaryRef db="RefSeq" id="NP_206803"/>
 
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</xref>
 
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<organism ncbiTaxId="85962">
 
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<names>
 
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<shortLabel/>
 
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<fullName>Helicobacter pylori 26695</fullName>
 
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</names>
 
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</organism>
 
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</proteinInteractor>
 
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<proteinInteractor id="G_4">
 
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<names>
 
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<shortLabel/>
 
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<fullName>GTP-binding membrane protein (lepA) HP0355</fullName>
 
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</names>
 
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<xref>
 
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<primaryRef db="DIP" id="3049N"/>
 
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<secondaryRef db="SWP" id="O25122"/>
 
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<secondaryRef db="PIR" id="C64564"/>
 
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<secondaryRef db="GI" id="2313456"/>
 
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<secondaryRef db="RefSeq" id="NP_207153"/>
 
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</xref>
 
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<organism ncbiTaxId="85962">
 
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<names>
 
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<shortLabel/>
 
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<fullName>Helicobacter pylori 26695</fullName>
 
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</names>
 
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</organism>
 
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</proteinInteractor>
 
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<proteinInteractor id="G_X">
 
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<names>
 
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<shortLabel/>
 
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<fullName>bogus-binding membrane protein (lepA) HP0355</fullName>
 
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</names>
 
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<xref>
 
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<primaryRef db="DIP" id="N"/>
 
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<secondaryRef db="SWP" id="O2"/>
 
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<secondaryRef db="PIR" id="C4"/>
 
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<secondaryRef db="GI" id="2"/>
 
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<secondaryRef db="RefSeq" id="207153"/>
 
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</xref>
 
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<organism ncbiTaxId="85962">
 
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<names>
 
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<shortLabel/>
 
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<fullName>Helicobacter pylori 26695</fullName>
 
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</names>
 
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</organism>
 
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</proteinInteractor>
 
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</interactorList>
 
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<interactionList>
 
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<interaction>
 
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<experimentList>
 
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<experimentDescription id="DIP_5317X">
 
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<bibref>
 
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<xref>
 
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<primaryRef db="pubmed" id="11196647"/>
 
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</xref>
 
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</bibref>
 
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<interactionDetection>
 
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<names>
 
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<shortLabel>Two hybrid test</shortLabel>
 
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</names>
 
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<xref>
 
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<primaryRef db="DO" id="DO:00018"/>
 
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<secondaryRef db="PSI" id="MI:0018"/>
 
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</xref>
 
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</interactionDetection>
 
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</experimentDescription>
 
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</experimentList>
 
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<participantList>
 
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<proteinParticipant>
 
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<proteinInteractorRef ref="G_1"/>
 
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</proteinParticipant>
 
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<proteinParticipant>
 
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<proteinInteractorRef ref="G_2"/>
 
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</proteinParticipant>
 
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</participantList>
 
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<xref>
 
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<primaryRef db="DIP" id="4305E"/>
 
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</xref>
 
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</interaction>
 
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<interaction>
 
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<experimentList>
 
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<experimentDescription id="DIP_5318X">
 
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<bibref>
 
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<xref>
 
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<primaryRef db="pubmed" id="11196647"/>
 
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</xref>
 
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</bibref>
 
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<interactionDetection>
 
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<names>
 
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<shortLabel>Two hybrid test</shortLabel>
 
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</names>
 
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<xref>
 
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<primaryRef db="DO" id="DO:00018"/>
 
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<secondaryRef db="PSI" id="MI:0018"/>
 
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</xref>
 
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</interactionDetection>
 
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</experimentDescription>
 
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</experimentList>
 
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<participantList>
 
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<proteinParticipant>
 
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<proteinInteractorRef ref="G_4"/>
 
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</proteinParticipant>
 
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<proteinParticipant>
 
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<proteinInteractorRef ref="G_2"/>
 
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</proteinParticipant>
 
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</participantList>
 
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<xref>
 
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<primaryRef db="DIP" id="4306E"/>
 
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</xref>
 
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</interaction>
 
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<interaction>
 
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<experimentList>
 
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<experimentDescription id="DIP_5318X">
 
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<bibref>
 
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<xref>
 
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<primaryRef db="pubmed" id="11196647"/>
 
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</xref>
 
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</bibref>
 
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<interactionDetection>
 
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<names>
 
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<shortLabel>Two hybrid test</shortLabel>
 
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</names>
 
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<xref>
 
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<primaryRef db="DO" id="DO:00018"/>
 
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<secondaryRef db="PSI" id="MI:0018"/>
 
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</xref>
 
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</interactionDetection>
 
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</experimentDescription>
 
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</experimentList>
 
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<participantList>
 
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<proteinParticipant>
 
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<proteinInteractorRef ref="G_X"/>
 
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</proteinParticipant>
 
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<proteinParticipant>
 
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<proteinInteractorRef ref="G_2"/>
 
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</proteinParticipant>
 
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</participantList>
 
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<xref>
 
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<primaryRef db="DIP" id="1E"/>
 
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</xref>
 
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</interaction>
 
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</interactionList>
 
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</entry>
 
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</entrySet>
 
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