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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2008-03-18 14:44:57 UTC
  • mfrom: (4 hardy)
  • mto: This revision was merged to the branch mainline in revision 6.
  • Revision ID: james.westby@ubuntu.com-20080318144457-1jjoztrvqwf0gruk
http://bugs.debian.org/448890
* debian/control:
  - Removed MIA Matt Hope (dopey) from the Uploaders field.
    Thank you for your work, Matt. I hope you are doing well.
  - Downgraded some recommended package to the 'Suggests' priority,
    according to the following discussion on Upstream's mail list.
    http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
    (Closes: #448890)
* debian/copyright converted to machine-readable format.

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Bio/Tools/Analysis/Protein/NetPhos.pm
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# $Id: NetPhos.pm,v 1.7 2003/12/08 13:55:16 radams Exp $
 
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# $Id: NetPhos.pm,v 1.13.4.1 2006/10/02 23:10:32 sendu Exp $
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#
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# BioPerl module for Bio::Tools::Analysis::Protein::NetPhos
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#
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# Cared for by Heikki Lehvaslaiho <heikki@ebi.ac.uk>
 
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# Cared for by Heikki Lehvaslaiho <heikki-at-bioperl-dot-org>
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#
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# Copyright Richard Adams
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#
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Bioperl modules. Send your comments and suggestions preferably to one
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of the Bioperl mailing lists.  Your participation is much appreciated.
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  bioperl-l@bioperl.org                       - General discussion
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  http://bio.perl.org/MailList.html           - About the mailing lists
 
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  bioperl-l@bioperl.org                  - General discussion
 
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  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
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=head2 Reporting Bugs
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Report bugs to the Bioperl bug tracking system to help us keep track
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the bugs and their resolution.  Bug reports can be submitted via email
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or the web:
 
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the bugs and their resolution.  Bug reports can be submitted via the
 
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web:
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  bioperl-bugs@bio.perl.org
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  http://bugzilla.bioperl.org/
 
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  http://bugzilla.open-bio.org/
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=head1 AUTHORS
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Richard Adams, Richard.Adams@ed.ac.uk, 
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Heikki Lehvaslaiho, heikki@ebi.ac.uk
 
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Heikki Lehvaslaiho, heikki-at-bioperl-dot-org
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=head1 APPENDIX
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package Bio::Tools::Analysis::Protein::NetPhos;
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use vars qw(@ISA  $FLOAT );
 
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use vars qw($FLOAT);
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use strict;
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use IO::String;
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use Bio::SeqIO;
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use HTTP::Request::Common qw (POST);
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use Bio::SeqFeature::Generic;
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use Bio::Tools::Analysis::SimpleAnalysisBase;
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@ISA = qw(Bio::Tools::Analysis::SimpleAnalysisBase);
 
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use base qw(Bio::Tools::Analysis::SimpleAnalysisBase);
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    $FLOAT = '[+-]?\d*\.\d*';
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    my $URL = 'http://www.cbs.dtu.dk/cgi-bin/nph-webface';
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=head2 result
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 Name    : result
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 Usage   : $job->result (...)
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 Returns : a result created by running an analysis