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BLASTN 2.2.13 [Nov-27-2005]
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Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
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Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
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(1997), "Gapped BLAST and PSI-BLAST: a new generation of
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protein database search programs", Nucleic Acids Res. 25:3389-3402.
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RID: 1141079027-8324-8848328247.BLASTQ4
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Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
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GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
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3,742,891 sequences; 16,670,205,594 total letters
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Query= pyrR, 558 bases, FB21E40C checksum.
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Sequences producing significant alignments: (Bits) Value
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gi|41400296|gb|AE016958.1| Mycobacterium avium subsp. paratub... 236 6e-59
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gi|54013472|dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, co 127 4e-26
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gi|57546753|dbj|BA000030.2| Streptomyces avermitilis MA-4680 gen 119 1e-23
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>gi|41400296|gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete
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Features in this part of subject sequence:
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Score = 236 bits (119), Expect = 6e-59
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Identities = 248/291 (85%), Gaps = 0/291 (0%)
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Query 262 CCGCCGCGTCCGCTGGAGGCCACCTCCATTCCCGCGGGCGGTGTCGACGACGCGATCGTC 321
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|||||||| ||||||||||||||||| || || || ||||| ||||||||||| | ||
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Sbjct 1166897 CCGCCGCGGCCGCTGGAGGCCACCTCGATCCCGGCCGGCGGCATCGACGACGCGCTGGTG 1166956
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Query 322 ATCCTCGTCGACGACGTCCTGTACTCGGGCCGCTCGGTCCGCTCGGCGCTGGACGCGCTG 381
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||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||
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Sbjct 1166957 ATCCTGGTCGACGACGTGCTCTACTCCGGCCGCTCGGTGCGCTCGGCACTGGACGCGCTG 1167016
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Query 382 CGCGACATCGGTCGCCCCCGCATCGTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGC 441
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|||||| | || ||||| || | ||||| ||||||||||||||||||||||| ||||||
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Sbjct 1167017 CGCGACGTGGGCCGCCCGCGGGTGGTGCAACTGGCGGTGCTGGTCGACCGCGGTCACCGC 1167076
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Query 442 GAGCTGCCCATCCGGGCCGACTACGTGGGCAAGAACGTCCCGACCTCACGCAGCGAAAGC 501
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|||||||| | || ||||||||||| |||||||||||||| ||||| ||||| || |||
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Sbjct 1167077 GAGCTGCCGCTGCGCGCCGACTACGTCGGCAAGAACGTCCCCACCTCGCGCAGTGAGAGC 1167136
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Query 502 GTCCACGTGCTGCTCAGCGAACACGACGACCGCGACGGAGTGGTGATCTCG 552
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|| ||||||||||| ||| ||||||| | |||||| ||||||||||||
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Sbjct 1167137 GTGCACGTGCTGCTGGCCGAGCACGACGGCGCCGACGGGGTGGTGATCTCG 1167187
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>gi|54013472|dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
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Features in this part of subject sequence:
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putative pyrimidine operon regulator
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Score = 127 bits (64), Expect = 4e-26
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Identities = 85/92 (92%), Gaps = 0/92 (0%)
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Query 406 GTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGCGAGCTGCCCATCCGGGCCGACTAC 465
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||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
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Sbjct 3837536 GTGCAGCTGGCCGTGCTGGTCGACCGCGGCCACCGCGAGCTGCCGATCCGCGCCGACTAC 3837477
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Query 466 GTGGGCAAGAACGTCCCGACCTCACGCAGCGA 497
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|||||||||||||| || ||||| ||||||||
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Sbjct 3837476 GTGGGCAAGAACGTGCCCACCTCCCGCAGCGA 3837445
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>gi|57546753|dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
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Features in this part of subject sequence:
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putative pyrimidine operon regulatory protein
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Score = 119 bits (60), Expect = 1e-23
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Identities = 135/160 (84%), Gaps = 0/160 (0%)
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Query 323 TCCTCGTCGACGACGTCCTGTACTCGGGCCGCTCGGTCCGCTCGGCGCTGGACGCGCTGC 382
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||||||||||||||||||| | ||| |||||| | ||||| | || || |||||||||
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Sbjct 8189890 TCCTCGTCGACGACGTCCTCTTCTCCGGCCGCACCATCCGCGCCGCCCTCGACGCGCTGA 8189949
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Query 383 GCGACATCGGTCGCCCCCGCATCGTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGCG 442
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||||||||| ||||| ||| ||| ||||| ||||| || ||||||||||| |||||||
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Sbjct 8189950 ACGACATCGGCCGCCCGCGCGCCGTACAGCTCGCGGTCCTCGTCGACCGCGGTCACCGCG 8190009
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Query 443 AGCTGCCCATCCGGGCCGACTACGTGGGCAAGAACGTCCC 482
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| ||||||||||| ||||||||||| ||||||||| ||||
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Sbjct 8190010 AACTGCCCATCCGCGCCGACTACGTCGGCAAGAACCTCCC 8190049
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Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental
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samples or phase 0, 1 or 2 HTGS sequences)
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Posted date: Feb 23, 2006 9:00 AM
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Number of letters in database: -509,663,586
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Number of sequences in database: 3,742,891
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Matrix: blastn matrix:1 -3
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Gap Penalties: Existence: 5, Extension: 2
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Number of Sequences: 3742891
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Number of Hits to DB: 2465616
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Number of extensions: 117843
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Number of successful extensions: 1771
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Number of sequences better than 1e-23: 0
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Number of HSP's better than 1e-23 without gapping: 0
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Number of HSP's gapped: 1771
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Number of HSP's successfully gapped: 0
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Length of database: 16670205594
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Length adjustment: 22
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Effective length of query: 536
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Effective length of database: 16670205594
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Effective search space: 8935230198384
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Effective search space used: 8891094027712
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removed
t/data/new_blastn.txt
