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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2008-03-18 14:44:57 UTC
  • mfrom: (4 hardy)
  • mto: This revision was merged to the branch mainline in revision 6.
  • Revision ID: james.westby@ubuntu.com-20080318144457-1jjoztrvqwf0gruk
http://bugs.debian.org/448890
* debian/control:
  - Removed MIA Matt Hope (dopey) from the Uploaders field.
    Thank you for your work, Matt. I hope you are doing well.
  - Downgraded some recommended package to the 'Suggests' priority,
    according to the following discussion on Upstream's mail list.
    http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
    (Closes: #448890)
* debian/copyright converted to machine-readable format.

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debian/rules
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#!/usr/bin/make -f
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# Made with the aid of dh_make, by Craig Small
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# Sample debian/rules that uses debhelper. GNU copyright 1997 by Joey Hess.
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# Some lines taken from debmake, by Cristoph Lameter.
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# Uncomment this to turn on verbose mode.
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#export DH_VERBOSE=1
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# This is the debhelper compatability version to use.
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export DH_COMPAT=2
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build: build-stamp
 
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include /usr/share/quilt/quilt.make
 
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build: patch build-stamp
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build-stamp:
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        dh_testdir
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        # Add here commands to compile the package.
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        echo "a" | perl Makefile.PL INSTALLDIRS=vendor
 
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        echo "n" | perl Makefile.PL INSTALLDIRS=vendor
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        $(MAKE) OPTIMIZE="-O2 -g -Wall"
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        touch build-stamp
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clean: 
 
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        touch $@
 
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clean: unpatch
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        dh_testdir
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        #dh_testroot
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        rm -f build-stamp install-stamp
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        -if [ -f Makefile ]; then $(MAKE) realclean ; fi
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        -rm -f biodatabases.pod biodesign.pod bioperl.pod bioscripts.pod
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        -rm -f bioperl.conf
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        dh_clean
 
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        dh_testroot
 
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        [ ! -f Makefile ] || $(MAKE) realclean
 
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        dh_clean build-stamp install-stamp bioperl.conf biodatabases.pod \
 
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        biodesign.pod bioperl.pod bioscripts.pod
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install: install-stamp
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install-stamp: build-stamp
 
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install-stamp: build
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        dh_testdir
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        dh_testroot
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        dh_clean -k
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        dh_installdirs
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        dh_installdocs
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        dh_installexamples examples/*
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        dh_installmanpages
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        dh_installchangelogs Changes 
 
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        dh_installdirs usr/share/perl5
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        # Add here commands to install the package into debian/bioperl.
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        $(MAKE) install PREFIX=`pwd`/debian/bioperl/usr INSTALLMAN3DIR=`pwd`/debian/bioperl/usr/share/man/man3
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        rm -f debian/bioperl/usr/lib/perl5/*-linux/*/perllocal.pod
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        rm -f debian/bioperl/usr/lib/perl/5.6.0/perllocal.pod
 
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        $(MAKE) install PREFIX=$(CURDIR)/debian/bioperl/usr INSTALLMAN3DIR=$(CURDIR)/debian/bioperl/usr/share/man/man3
 
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#       rm -f debian/bioperl/usr/lib/perl5/*-linux/*/perllocal.pod
 
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#       rm -f debian/bioperl/usr/lib/perl/5.6.0/perllocal.pod
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        find debian/bioperl -type f -name .packlist | xargs rm -f
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        -find debian/bioperl/usr/lib/ -depth -type d -empty | xargs rmdir
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        -chmod a-x debian/bioperl/usr/share/perl5/*.pod
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        chmod 644 debian/bioperl/usr/share/perl5/Bio/Variation/README
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        chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/BPlite/Iteration.pm
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        chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/BPpsilite.pm
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        find debian/bioperl/usr/share/perl5/Bio -type f -exec chmod a-x {} \;
 
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#       -find debian/bioperl/usr/lib/ -depth -type d -empty | xargs rmdir
 
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#       -chmod a-x debian/bioperl/usr/share/perl5/*.pod
 
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#       chmod 644 debian/bioperl/usr/share/perl5/Bio/Variation/README
 
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#       chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/BPlite/Iteration.pm
 
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#       chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/BPpsilite.pm
 
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#       find debian/bioperl/usr/share/perl5/Bio -type f -exec chmod a-x {} \;
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#X#     chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/Run/Makefile.PL
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        chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/CHANGES
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        chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/README
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        -mv debian/bioperl/usr/share/perl5/bptutorial.pl debian/bioperl/usr/share/doc/bioperl/examples/
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        -mv debian/bioperl/usr/bin/bp_remote_blast.pl debian/bioperl/usr/share/doc/bioperl/
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        # This version of bioperl provides a lot of scripts, that it installs to usr/bin/
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        # Some of these are examples, and some of these are applications.
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        mv ./debian/bioperl/usr/bin ./debian/bioperl/usr/share/doc/bioperl/bin
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        touch install-stamp
 
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#       chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/CHANGES
 
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#       chmod 644 debian/bioperl/usr/share/perl5/Bio/Tools/Blast/README
 
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#       -mv debian/bioperl/usr/share/perl5/bptutorial.pl debian/bioperl/usr/share/doc/bioperl/examples/
 
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        # prename is the rename utility written in perl usually available as /usr/bin/rename in Debian.
 
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        prename s/.pl$$// debian/bioperl/usr/bin/*pl
 
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        prename s/.pl.1p$$/.1p/ debian/bioperl/usr/share/man/man1/*1p
 
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        touch $@
 
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test: build
 
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#       Disabled for the moment as it tries to access internet.
 
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#       ./Build test
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binary-indep: build install
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binary-arch: build install
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        dh_testdir
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        dh_testroot
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        chmod a-x -R debian/bioperl/usr/share/doc/bioperl/examples
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#       mv debian/bioperl/usr/share/doc/bioperl/Changes debian/bioperl/usr/share/doc/bioperl/changelog
 
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#       chmod a-x -R debian/bioperl/usr/share/doc/bioperl/examples
 
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        dh_installchangelogs Changes 
 
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        dh_installdocs
 
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        dh_installexamples examples/*
 
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        dh_install
 
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        dh_installman
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        dh_strip
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        dh_compress
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        dh_fixperms
 
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        dh_perl
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        dh_installdeb
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        dh_perl
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        dh_gencontrol
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        dh_md5sums
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        dh_builddeb
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source diff:                                                                  
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        @echo >&2 'source and diff are obsolete - use dpkg-source -b'; false
 
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binary-arch:
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binary: binary-indep binary-arch
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.PHONY: build clean binary-indep binary-arch binary