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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2008-03-18 14:44:57 UTC
  • mfrom: (4 hardy)
  • mto: This revision was merged to the branch mainline in revision 6.
  • Revision ID: james.westby@ubuntu.com-20080318144457-1jjoztrvqwf0gruk
http://bugs.debian.org/448890
* debian/control:
  - Removed MIA Matt Hope (dopey) from the Uploaders field.
    Thank you for your work, Matt. I hope you are doing well.
  - Downgraded some recommended package to the 'Suggests' priority,
    according to the following discussion on Upstream's mail list.
    http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
    (Closes: #448890)
* debian/copyright converted to machine-readable format.

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t/data/testfile.erpin
 
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Training set:   "/home/Administrator/pyrR.epn":
 
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                40 sequences of length 43
 
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Cutoff:         1.00  
 
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Database:       "AE016879.fna"
 
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                5227266 nucleotides to be processed in 1 sequence
 
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                ATGC ratios: 0.322  0.324  0.176  0.178
 
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E-value at cutoff 1.0 for 5.2Mb double strand data: 4.59e-02
 
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>gi|30260185|gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
 
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FW   1 5181155..5181183  30.36  1.68e-05
 
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CTTT.aacc--.CAACC.CCGTGA.GGTTG.a.GAAG
 
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>gi|30260185|gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
 
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RC   1 3709092..3709121  28.97  5.61e-05
 
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CTTT.taatt-.CAGTC.CTGTGA.GACCG.g.AAAG
 
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RC   2 3710524..3710553  27.97  1.31e-04
 
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TTTT.aaatg-.TAGTC.CTGTGA.GGCTG.c.CAAA
 
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RC   3 3711223..3711251  31.64  4.44e-06
 
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CTTT.aaca--.CAGCC.CCGTGA.GGTTG.a.GAAG
 
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-------- at level 1 --------
 
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10454532 bases processed
 
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cutoff: 1.00
 
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6 config. per site
 
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10 hits
 
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4 independent hits
 
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